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View Structure Prediction Details

Protein: COB21_ARATH
Organism: Arabidopsis thaliana
Length: 920 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for COB21_ARATH.

Predicted Domain #1
Region A:
Residues: [1-300]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLRLEIKRK FAQRSERVKS VDLHPTEPWI LASLYSGTLC IWNYQTQTMV KSFDVTELPV  60
   61 RSAKFIARKQ WVVAGADDMF IRVYNYNTMD KIKVFEAHAD YIRCVAVHPT LPYVLSSSDD 120
  121 MLIKLWDWEK GWLCTQIFEG HSHYVMQVTF NPKDTNTFAS ASLDRTIKIW NLGSPDPNFT 180
  181 LDAHLKGVNC VDYFTGGDKP YLITGSDDHT AKVWDYQTKS CVQTLEGHTH NVSAVSFHPE 240
  241 LPIIITGSED GTVRIWHATT YRLENTLNYG LERVWAIGHI KGSRRVVIGY DEGSIMVKLG 300
  301 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 90.154902
Match: 1vyhC
Description: PAF-AH Holoenzyme: Lis1/Alfa2
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [301-358]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 REIPVASMDN SGKIIWAKHN EIHTVNIKSV GADEVTDGER LPLAVKELGT CDLYPQSL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.154902
Match: 1z68A
Description: Crystal Structure Of Human Fibroblast Activation Protein alpha
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [359-453]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KHNPNGRFVV VCGDGEYIIY TALAWRNRSF GSALEFVWSS DGEHAVRESS TKIKIFSKNF  60
   61 QEKKTVRPTF SAEHIFGGTL LTMCSSDFIC FYDWA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [454-529]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ECRLIRRIDV TVKNLYWADS GDLVAIASDT SFYILKFNRD IVSSYFDGGK QIDEEGIEDA  60
   61 FELLNETNER VRTGLW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [530-612]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGDCFIYTNS SWRLNYCVGG EVTTMYHLDR PMYLLGYLAN QSRVYLIDKE FNVIGYTLLL  60
   61 SLIEYKTLVM RGDLEQANEV LPS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [613-920]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPKEHHNSVA HFLESRGMTE DALEVATDPD YRFELAIQLG RLAVAKDIAV EAQNESKWKQ  60
   61 LGELAMSSGK LDMAEECMRH AMDLSGLLLL YSSLGDADGM MKLAALAKEQ GKNNVAFLCL 120
  121 FMLGQVEDCL HLLVESNRIP EAALMARSYL PSKVSEIVAL WRNDLTKISP KAAESLADPE 180
  181 EYPNLFEEWQ VALSLENRAA ETRGVHPPAG DYCSHADRDH TTLVDAFRIM QIEEEGRLEQ 240
  241 GDVLDEVGEE GEDGEEEEEE DRQEESSDGR QQNVEEEAVV VDADSTDGAV LVNGNESEEQ 300
  301 WVLTPPQE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle