YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|15231876, gi|...

General Information:
Name(s) found: gi|6648195 [NCBI NR]
gi|15231876 [NCBI NR]
Description(s) found:
Found 10 descriptions.
SHOW ALL
  • gi|6648195|gb|AAF21193.1|AC013483_17 putative polygalacturonase [Arabidopsis thaliana] [NCBI NR]
  • gi|15231876|ref|NP_187440.1| polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 397 amino acids

    Gene Ontology:
    Cellular Component: plant-type cell wall [IDA]
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    Molecular Function: polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSYFGISTI FVICLLGFSA NAHEVLRLTS SPGSDITQAL LRAFTTACQS PTPRKVVIPK  60
   61 GQFKLGEIMM SGPCKSPVEI TLLGTVLADG NSIHGKEKWV VFQRMDGFRL NGGGTFDGEG 120
  121 NAAWRVNNCH KTFECKKLPI SIRFDFVTNA EIRDISSIDA KNFHINVIGA KNMTFDNVKI 180
  181 MAPAESPNTD GIHLGRSVGV SIINSRISTG DDCVSVGDGM VNLLVKNVVC GPGHGISVGS 240
  241 LGRYGHEQDV SGIRVINCTL QETDNGLRIK TWPSAACSTT ASNIHFENII LRNVSNPILI 300
  301 DQEYCPWNQC NKQKSSSIKL ANISFRRIRG TSGNKDAVKL LCSKGYPCEN VQVGDINIQY 360
  361 TGADGPATFM CSNVRPKLVG TQFPKACNTP PVLTQPK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..397] PSI-BLAST 39.154902 Polygalacturonase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • polygalacturonase activity
    		•  3.63113788404352 bayes_pls_golite062009
  • catalytic activity
    		•  0.67288476528593 bayes_pls_golite062009
  • hydrolase activity
    		•  0.329563804802467 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle