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Protein Overview: gi|10178155, gi|...

General Information:
Name(s) found: gi|5823305 [NCBI NR]
gi|18421985 [NCBI NR]
gi|106879173 [NCBI NR]
gi|10178155 [NCBI NR]
Description(s) found:
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  • gi|5823305|gb|AAD53091.1|AF175986_1 putative transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|18421985|ref|NP_568582.1| MYB22 (myb domain protein 22); DNA binding / transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|106879173|gb|ABF82616.1| At5g40430 [Arabidopsis thaliana] [NCBI NR]
  • gi|10178155|dbj|BAB11600.1| transcription factor [Arabidopsis thaliana] [NCBI NR]
  • (Q9SPH0) Putative transcription factor [athaliana3702.FASTAC.txt]
  • transcription factor [Arabidopsis thaliana]gi|5823305|gb|AAD53091.1| putative transcription factor [Arabidopsis thaliana]gi|18421985|ref|NP_568582.1| myb family transcription factor (MYB22) [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Myb family transcription factor (MYB22) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: AtMYB22, MYB22 | MYB22 (myb domain protein 22); DNA binding / transcription factor | chr5:16193655-16194959 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g40430 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • MYB22; DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: MYB22, AtMYB22 | myb domain protein 22 | chr5:16176427-16177731 REVERSE LENGTH=256 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At5g40430 OS=Arabidopsis thaliana GN=MYB22 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 256 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: regulation of transcription [TAS]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEPQLFDVP VLEGIKNTTN EIMNQLEDDK MKKTYENKKE ASTSKYLKKS DITKKRWTES  60
   61 EDIKLKEMVA LEPKKWTKVA KHFEGRTPKQ CRERWHNHAR PNVKKTTWSE EEDQILIEVH 120
  121 KVIGAKWIQI SEQLPGRSYN NVKNHWNTTK RRVQNKSGRT VNRVGNNILE NYIRSITINN 180
  181 DDESDGEPTN IENYHDDSED MLYGEMNLSP EAITQTTKPL TDASTISPYI PMPKENYTLE 240
  241 VCESLEDYLE LLRWWD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..158] PSI-BLAST 38.69897 c-Myb, DNA-binding domain
    2 View Details [159..256] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.334577365229545 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0696342306231097 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle