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Protein Overview: gi|25406918, gi|...

General Information:
Name(s) found: gi|8927675 [NCBI NR]
gi|25406918 [NCBI NR]
gi|15221475 [NCBI NR]
Description(s) found:
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  • gi|8927675|gb|AAF82166.1|AC068143_8 Contains similarity to a PBK1 protein from Homo sapiens gb|AJ007398. [Arabidopsis thaliana] [NCBI NR]
  • pir||F86199 hypothetical protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15221475|ref|NP_172126.1| ribosomal protein-related [Arabidopsis thaliana] [NCBI NR]
  • (Q9LMI1) T2D23.8 protein [athaliana3702.FASTAC.txt]
  • hypothetical protein [imported] - Arabidopsis thalianagi|8927675|gb|AAF82166.1| Contains similarity to a PBK1 protein from Homo sapiens gb|AJ007398. [Arabidopsis thaliana]gi|15221475|ref|NP_172126.1| ribosomal protein-related [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Ribosomal protein-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | ribosomal protein-related | chr1:1945123-1945887 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Contains similarity to a PBK1 protein from Homo sapiens gb|AJ007398. [Arabidopsis thaliana] [NCBI-RefSeq_human_na_10-15-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Ribosomal protein L1p/L10e family | chr1:1945124-1945888 FORWARD LENGTH=254 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Ribosomal protein .1/L10e family OS=Arabidopsis thaliana GN=T2D23.8 PE=4 SV=1 [ARATH-contam.fasta]
  • Ribosomal protein L1p/L10e family OS=Arabidopsis thaliana GN=T2D23.8 PE=1 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 254 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    chloroplast envelope [IDA]
    Biological Process: RNA processing [IEA]
    Molecular Function: RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTTTTAAL PQRHQSKVDP QNVNRAVKSL LKWWDSKSKT ENSESLENDG FVYLIVTLKR  60
   61 IPQLDRTNPL MIPLPHPLID LVAEDPPELC LIIDDKHKNK ITKEAALKKI EAEKIPITTV 120
  121 IKVSKLKSDL RKLEEEKRFE LYFAERRLMP MLPKLLGKEF VKKNKTPIAI NLRHGSWKEQ 180
  181 IEKACESALF FVGTGTCSVV KVAKLSMGRN EIAENVVAAM NGIGDLVPGR WKNVKLFHLK 240
  241 LLESLALPVY QSVA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..254] PSI-BLAST 55.69897 No description for 2j01C was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle