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Protein Overview: R47CP_ARATH

General Information:
Name(s) found: R47CP_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|5668811|gb|AAD46037.1|AC007519_22 Contains 3 PF|00076 RNA recognition motif domains. EST gb|T20424 comes from this gene. [Arabidopsis thaliana] [NCBI NR]
  • pir||C96515 hypothetical protein F16N3.23 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15220241|ref|NP_175181.1| ATRBP47C' (RNA-binding protein 47C'); RNA binding [Arabidopsis thaliana] [NCBI NR]
  • gi|124301030|gb|ABN04767.1| At1g47500 [Arabidopsis thaliana] [NCBI NR]
  • gi|110743035|dbj|BAE99410.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana GN=RBP47C' PE=2 SV=1 [Swiss-Prot]
  • (Q9SX80) F16N3.23 protein [athaliana3702.FASTAC.txt]
  • Contains 3 PF|00076 RNA recognition motif domains. EST gb|T20424 comes from this gene. [Arabidopsis thaliana]gi|25386564|pir||C96515 hypothetical protein F16N3.23 [imported] - Arabidopsis thalianagi|15220241|ref|NP_175181.1| RNA-binding protein 47 (RBP [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 RNA-binding protein 47 (RBP47) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATRBP47C' | ATRBP47C' (RNA-BINDING PROTEIN 47C'); RNA binding | chr1:17435122-17437245 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Contains 3 PF|00076 RNA recognition motif domains. EST gb|T20424 comes from this gene. [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ATRBP47C'; RNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATRBP47C', RBP47C' | RNA-binding protein 47C' | chr1:17432682-17434805 FORWARD LENGTH=434 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 434 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: RNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADVKVQSES ESSDSHPLVD YQSLPPYPPP HPPVEVEENQ PKTSPTPPPP HWMRYPPVLM  60
   61 PQMMYAPPPP MPFSPYHQYP NHHHFHHQSR GNKHQNAFNG ENKTIWVGDL QNWMDEAYLN 120
  121 SAFTSAEERE IVSLKVIRNK HNGSSEGYGF VEFESHDVAD KVLQEFNGAP MPNTDQPFRL 180
  181 NWASFSTGEK RLENNGPDLS IFVGDLAPDV SDALLHETFS EKYPSVKAAK VVLDANTGRS 240
  241 KGYGFVRFGD ENERTKAMTE MNGVKCSSRA MRIGPATPRK TNGYQQQGGY MPSGAFTRSE 300
  301 GDTINTTIFV GGLDSSVTDE DLKQPFSEFG EIVSVKIPVG KGCGFVQFVN RPNAEEALEK 360
  361 LNGTVIGKQT VRLSWGRNPA NKQPRDKYGN QWVDPYYGGQ FYNGYGYMVP QPDPRMYPAA 420
  421 PYYPMYGGHQ QQVS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..92] FFAS03 1.03 Crystal structure of N-terminal domain of hypothetical protein SAV0287 from Staphylococcus aureus
    2 View Details [93..289] PSI-BLAST 41.0 HNRNP A1 (RBD1,2) FROM HOMO SAPIENS
    3 View Details [290..434] PSI-BLAST 9.69897 No description for 2dhgA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.86761524461453 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.984778969024386 bayes_pls_golite062009
  • protein binding
    		•  0.426607329742248 bayes_pls_golite062009
  • RNA binding
    		•  0.0622892880461364 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle