| Protein: | R47CP_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 434 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for R47CP_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
316.0 | [0..1] | [434..1] |
|
Region A: Residues: [1-92] |
1 11 21 31 41 51
| | | | | |
1 MADVKVQSES ESSDSHPLVD YQSLPPYPPP HPPVEVEENQ PKTSPTPPPP HWMRYPPVLM 60
61 PQMMYAPPPP MPFSPYHQYP NHHHFHHQSR GN
|
| Detection Method: |  |
| Confidence: | 1.03 |
| Match: | 1wv3A |
| Description: | Crystal structure of N-terminal domain of hypothetical protein SAV0287 from Staphylococcus aureus |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [93-289] |
1 11 21 31 41 51
| | | | | |
1 KHQNAFNGEN KTIWVGDLQN WMDEAYLNSA FTSAEEREIV SLKVIRNKHN GSSEGYGFVE 60
61 FESHDVADKV LQEFNGAPMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF VGDLAPDVSD 120
121 ALLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR 180
181 IGPATPRKTN GYQQQGG
|
| Detection Method: | |
| Confidence: | 41.0 |
| Match: | 1ha1A |
| Description: | HNRNP A1 (RBD1,2) FROM HOMO SAPIENS |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.86761524461453 | bayes_pls_golite062009 |
| nucleic acid binding | 0.984778969024386 | bayes_pls_golite062009 |
| protein binding | 0.426607329742248 | bayes_pls_golite062009 |
| RNA binding | 0.0622892880461364 | bayes_pls_golite062009 |
|
Region A: Residues: [290-434] |
1 11 21 31 41 51
| | | | | |
1 YMPSGAFTRS EGDTINTTIF VGGLDSSVTD EDLKQPFSEF GEIVSVKIPV GKGCGFVQFV 60
61 NRPNAEEALE KLNGTVIGKQ TVRLSWGRNP ANKQPRDKYG NQWVDPYYGG QFYNGYGYMV 120
121 PQPDPRMYPA APYYPMYGGH QQQVS
|
| Detection Method: | |
| Confidence: | 9.69897 |
| Match: | 2dhgA |
| Description: | No description for 2dhgA was found. |
