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Protein Overview: RH50_ARATH

General Information:
Name(s) found: RH50_ARATH [Swiss-Prot]
Description(s) found:
Found 17 descriptions.
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  • DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana GN=RH50 PE=2 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 781 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    Biological Process: biological_process [ND]
    Molecular Function: nucleic acid binding [IEA]
    ATP binding [IEA]
    ATP-dependent helicase activity [IEA][ISS]
    helicase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLARAPPPYF NFPARNNTIC NRNEIVRLFR NGGGVVARGA GFTRRPLETS SSYDDSTDDG  60
   61 FVIISAADKE NEFAPPPSSD LLSSIPSESA RRNGSRSRGL TASFGRLKAQ KVKALVGKVT 120
  121 QKKQHMSHNE EEDEDDASDE NYSADEGFGS SSILDLMRKK LAMKAIPRSG KSAERNEVKR 180
  181 ASKVRESRES RRDLDRLEGD DEDVDEVSNP DRFTDNQRAG SRSSYSKGGY AANSRGKGDR 240
  241 LSVARDLDSF EGHGRAIDEV SNPRKFNDNE RAESRSSYSR DSSANSRGRE DRRFVAKELD 300
  301 TFQGRDKAYD EVYNPRRFTD NERGLRGGSH SKGSDTNSRG WGDRRSVVYT RDMDDWRERN 360
  361 KTKDTRETGF FSRKTFAEIG CSEDMMKALK EQNFDRPAHI QAMAFSPVID GKSCIIADQS 420
  421 GSGKTLAYLV PVIQRLREEE LQGHSKSSPG CPRVIVLVPT AELASQVLAN CRSISKSGVP 480
  481 FRSMVVTGGF RQRTQLENLE QGVDVLIATP GRFTYLMNEG ILGLSNLRCA ILDEVDILFG 540
  541 DDEFEAALQN LINSSPVTAQ YLFVTATLPL EIYNKLVEVF PDCEVVMGPR VHRVSNALEE 600
  601 FLVDCSGDDN AEKTPETAFQ NKKTALLQIM EENPVSKTII FCNKIETCRK VENIFKRVDR 660
  661 KERQLHVLPF HAALSQESRL TNMQEFTSSQ PEENSLFLVC TDRASRGIDF SGVDHVVLFD 720
  721 FPRDPSEYVR RVGRTARGAR GKGKAFIFVV GKQVGLARRI IERNEKGHPV HDVPNAYEFT 780
  781 T

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..166] MSA 5.175997 View MSA. No confident structure predictions are available.
    2 View Details [167..319] deduced N/A No confident structure predictions are available.
    3 View Details [320..781] PSI-BLAST 91.522879 No description for 2db3A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle