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Protein Overview: HDG9_ARATH

General Information:
Name(s) found: HDG9_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75309030|sp|Q9FFI0.1|HDG9_ARATH RecName: Full=Homeobox-leucine zipper protein HDG9; AltName: Full=Homeodomain transcription factor HDG9; AltName: Full=HD-ZIP protein HDG9; AltName: Full=Protein HOMEODOMAIN GLABROUS 9; AltName: Full=Homeodomain GLABRA 2 [NCBI NR]
  • gi|15237948|ref|NP_197234.1| HDG9 (HOMEODOMAIN GLABROUS 9); DNA binding / sequence-specific DNA binding / transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|10177077|dbj|BAB10519.1| homeobox protein [Arabidopsis thaliana] [NCBI NR]
  • Homeobox-leucine zipper protein HDG9 OS=Arabidopsis thaliana GN=HDG9 PE=2 SV=1 [Swiss-Prot]
  • (Q9FFI0) Homeobox protein [athaliana3702.FASTAC.txt]
  • homeobox protein [Arabidopsis thaliana]gi|15237948|ref|NP_197234.1| homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Homeobox-leucine zipper family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: HDG9 | HDG9 (HOMEODOMAIN GLABROUS9); DNA binding / sequence-specific DNA binding / transcription factor | chr5:5703382-5707639 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • homeobox protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: HDG9 | homeodomain GLABROUS 9 | chr5:5703380-5707637 REVERSE LENGTH=718 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 718 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA][ISS]
    Biological Process: regulation of transcription, DNA-dependent [IEA][ISS]
    regulation of transcription [IEA]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]
    sequence-specific DNA binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFTRDDNSS DERENDVDAN TNNRHEKKGY HRHTNEQIHR LETYFKECPH PDEFQRRLLG  60
   61 EELNLKPKQI KFWFQNKRTQ AKSHNEKADN AALRAENIKI RRENESMEDA LNNVVCPPCG 120
  121 GRGPGREDQL RHLQKLRAQN AYLKDEYERV SNYLKQYGGH SMHNVEATPY LHGPSNHAST 180
  181 SKNRPALYGT SSNRLPEPSS IFRGPYTRGN MNTTAPPQPR KPLEMQNFQP LSQLEKIAML 240
  241 EAAEKAVSEV LSLIQMDDTM WKKSSIDDRL VIDPGLYEKY FTKTNTNGRP ESSKDVVVVQ 300
  301 MDAGNLIDIF LTAEKWARLF PTIVNEAKTI HVLDSVDHRG KTFSRVIYEQ LHILSPLVPP 360
  361 REFMILRTCQ QIEDNVWMIA DVSCHLPNIE FDLSFPICTK RPSGVLIQAL PHGFSKVTWI 420
  421 EHVVVNDNRV RPHKLYRDLL YGGFGYGARR WTVTLERTCE RLIFSTSVPA LPNNDNPGVV 480
  481 QTIRGRNSVM HLGERMLRNF AWMMKMVNKL DFSPQSETNN SGIRIGVRIN NEAGQPPGLI 540
  541 VCAGSSLSLP LPPVQVYDFL KNLEVRHQWD VLCHGNPATE AARFVTGSNP RNTVSFLEPS 600
  601 IRDINTKLMI LQDSFKDALG GMVAYAPMDL NTACAAISGD IDPTTIPILP SGFMISRDGR 660
  661 PSEGEAEGGS YTLLTVAFQI LVSGPSYSPD TNLEVSATTV NTLISSTVQR IKAMLKCE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..117] PSI-BLAST 18.39794 Paired protein
    2 View Details [118..220] deduced N/A No confident structure predictions are available.
    3 View Details [221..479] FFAS03 3.68 No description for 2r55A was found.
    4 View Details [480..602] deduced N/A No confident structure predictions are available.
    5 View Details [603..718] MSA 2.05598 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle