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Protein Overview: gi|7671508, gi|1...

General Information:
Name(s) found: gi|7671508 [NCBI NR]
gi|15242287 [NCBI NR]
gi|11358817 [NCBI NR]
gi|110737570 [NCBI NR]
Description(s) found:
Found 13 descriptions.
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  • gi|7671508|emb|CAB89349.1| rRNA methylase-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15242287|ref|NP_197043.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] [NCBI NR]
  • pir||T49974 rRNA methylase-like protein - Arabidopsis thaliana [NCBI NR]
  • gi|110737570|dbj|BAF00727.1| rRNA methylase - like protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 350 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    Biological Process: RNA processing [IEA][ISS]
    Molecular Function: RNA methyltransferase activity [IEA][ISS]
    RNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSCKSLIRA SISSFPFVPL PNPNFSITFI SVRAFSPLSV LHPNSSCIVT ARRTFHGAVA  60
   61 LSPESLTEES PKDTVKGLLT TNRGEASSLM KMERRCSLSN GEGDCRGSWF PYEDRFRCGE 120
  121 VHLSSREVLE AVSPHMMEER TDRFRRVVEN RSYSVCLVVE GLSDFGNISA AFRSADALGI 180
  181 QSVHVVSCDS SKRYNGNRHV SMGAEKWLDI EFWDTPKECF KVLKSRGYRI ATTHLGMDTV 240
  241 SIYDMDWSCP TAIVVGNEGR GISDEALELS DLRCSIPMNG MVDSFNVSVA AGILMHHAVS 300
  301 DRTTRLGSHG DLSEAEKEIL MAEFSLRHSR SSICIAYEFA KRKQQHSTSS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..350] PSI-BLAST 59.30103 RlmB, C-terminal domain; RlmB, N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transferase activity
    		•  0.0614372540300698 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.66

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle