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Protein Overview: gi|13605593, gi|...

General Information:
Name(s) found: gi|20197688 [NCBI NR]
gi|19548077 [NCBI NR]
gi|18399445 [NCBI NR]
gi|13605593 [NCBI NR]
Description(s) found:
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  • gi|20197688|gb|AAD20926.2| putative riboflavin synthase alpha chain [Arabidopsis thaliana] [NCBI NR]
  • gi|19548077|gb|AAL87403.1| At2g20690/F5H14.34 [Arabidopsis thaliana] [NCBI NR]
  • gi|18399445|ref|NP_565482.1| lumazine-binding family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|13605593|gb|AAK32790.1|AF361622_1 At2g20690/F5H14.34 [Arabidopsis thaliana] [NCBI NR]
  • (Q9SKU8) Putative riboflavin synthase alpha chain (At2g20690/F5H14.34) [athaliana3702.FASTAC.txt]
  • putative riboflavin synthase alpha chain [Arabidopsis thaliana]gi|19548077|gb|AAL87403.1| At2g20690/F5H14.34 [Arabidopsis thaliana]gi|13605593|gb|AAK32790.1| At2g20690/F5H14.34 [Arabidopsis thaliana]gi|18399445|ref|NP_565482.1| lumazine-binding family [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Lumazine-binding family protein, SP:P50854 Riboflavin synthase alpha chain (EC 2.5.1.9) {Actinobacillus pleuropneumoniae} [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | lumazine-binding family protein | chr2:8930423-8931702 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative riboflavin synthase alpha chain [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At2g20690/F5H14.34 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | lumazine-binding family protein | chr2:8923342-8924621 FORWARD LENGTH=271 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At2g20690/F5H14.34 OS=Arabidopsis thaliana GN=At2g20690 PE=2 SV=2 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 271 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    Biological Process: riboflavin biosynthetic process [IDA]
    Molecular Function: riboflavin synthase activity [IDA]
    binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMAARTHCIN LIPKVCLPQS FRTGESVTNL RFDCVSKSSK LSLKTSCGRS RTHHRRQNLS  60
   61 IRSVFTGIVE EMGEVKDLGM ADHGGFDLKI GARVVLEDVK LGDSIAVNGT CLTVTEFNAE 120
  121 EFTVGLAPET LRKTSLEELK KGSPVNLERA LQPVSRMGGH VVQGHVDGTG VIESMEVEGD 180
  181 SLWVKVKADK GLLKYIVPKG FVAVDGTSLT VVDVFDEESC FNFMMIAYTQ QNVVIPTKKI 240
  241 GQKVNLEVDI MGKYVERLLT SGGFSKGKEN I

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..271] PSI-BLAST 69.522879 Riboflavin synthase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • riboflavin synthase activity
    		•  5.11500941509376 bayes_pls_golite062009
  • catalytic activity
    		•  2.05427820269334 bayes_pls_golite062009
  • transferase activity
    		•  0.708491789248912 bayes_pls_golite062009
  • binding
    		•  0.534066059984103 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle