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View Structure Prediction Details

Protein: gi|13605593, gi|...
Organism: Arabidopsis thaliana
Length: 271 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|13605593, gi|....

Description E-value Query
Range
Subject
Range
gi|21593865 - gi|21593865|gb|AAM65832.1| putative riboflavin synthase alpha chain [Arabidopsis thaliana]
405.0 [0..2] [271..1]

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Predicted Domain #1
Region A:
Residues: [1-271]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMAARTHCIN LIPKVCLPQS FRTGESVTNL RFDCVSKSSK LSLKTSCGRS RTHHRRQNLS  60
   61 IRSVFTGIVE EMGEVKDLGM ADHGGFDLKI GARVVLEDVK LGDSIAVNGT CLTVTEFNAE 120
  121 EFTVGLAPET LRKTSLEELK KGSPVNLERA LQPVSRMGGH VVQGHVDGTG VIESMEVEGD 180
  181 SLWVKVKADK GLLKYIVPKG FVAVDGTSLT VVDVFDEESC FNFMMIAYTQ QNVVIPTKKI 240
  241 GQKVNLEVDI MGKYVERLLT SGGFSKGKEN I

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 69.522879
Match: 1kzlA
Description: Riboflavin synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
riboflavin synthase activity 5.11500941509376 bayes_pls_golite062009
catalytic activity 2.05427820269334 bayes_pls_golite062009
transferase activity 0.708491789248912 bayes_pls_golite062009
binding 0.534066059984103 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle