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Protein Overview: gi|119360069, gi...

General Information:
Name(s) found: gi|8809699 [NCBI NR]
gi|15237793 [NCBI NR]
gi|119360069 [NCBI NR]
Description(s) found:
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  • gi|8809699|dbj|BAA97240.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|15237793|ref|NP_197750.1| tRNA 2'phosphotransferase, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|119360069|gb|ABL66763.1| At5g23600 [Arabidopsis thaliana] [NCBI NR]
  • (Q9LT04) Similarity to phosphotransferase [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|15237793|ref|NP_197750.1| tRNA 2'phosphotransferase, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 TRNA 2'phosphotransferase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | tRNA 2'phosphotransferase, putative | chr5:7955997-7956635 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • tRNA 2'-phosphotransferase/ transferase, transferring phosphorus-containing groups [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | RNA 2'-phosphotransferase, Tpt1 / KptA family | chr5:7955994-7956632 FORWARD LENGTH=212 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At5g23600 OS=Arabidopsis thaliana GN=At5g23600 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 212 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: tRNA splicing, via endonucleolytic cleavage and ligation [IEA][ISS]
    Molecular Function: transferase activity, transferring phosphorus-containing groups [IEA]
    tRNA 2'-phosphotransferase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFVDRIDAL GRILTRILRH MATELRLNMR GDGFVKVEDL LNLNLKTCAN IQLNSHTIDE  60
   61 IREAVTRDNK KRFSLIDEDG ELLIRANQGH SITTVESEKL LKPILSPEEA PVCVHGTYRK 120
  121 NLESILASGL KRMNRMHVHF SCGLPTDGEV ISGVRRNVNV IIFLHIKKAL EDGIAFYISD 180
  181 NKVILTQGIV GVLPVDYFQK IESWPDRQSI PF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..212] PSI-BLAST 47.30103 Crystal Structure of APE0204 from Aeropyrum pernix

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transferase activity, transferring pentosyl groups
    		•  3.32684164956045 bayes_pls_golite062009
  • transferase activity, transferring glycosyl groups
    		•  3.05863250787371 bayes_pls_golite062009
  • NAD+ ADP-ribosyltransferase activity
    		•  2.37948308090148 bayes_pls_golite062009
  • binding
    		•  1.5526011325617 bayes_pls_golite062009
  • transferase activity
    		•  1.5222353301058 bayes_pls_golite062009
  • DNA binding
    		•  1.26521338734397 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.22968208666588 bayes_pls_golite062009
  • catalytic activity
    		•  0.886617552734979 bayes_pls_golite062009
  • protein binding
    		•  0.847020402509418 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle