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Protein Overview: WRK40_ARATH

General Information:
Name(s) found: WRK40_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|6503295|gb|AAF14671.1|AC011713_19 Similar to gb|Z48431 DNA-binding protein from Avena fatua. [Arabidopsis thaliana] [NCBI NR]
  • pir||A96841 hypothetical protein F23A5.19 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|25054846|gb|AAN71913.1| putative WRKY family transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|225898096|dbj|BAH30380.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|20978791|sp|Q9SAH7.1|WRK40_ARATH RecName: Full=Probable WRKY transcription factor 40; AltName: Full=WRKY DNA-binding protein 40 [NCBI NR]
  • gi|19172388|gb|AAL85879.1|AF480149_1 WRKY transcription factor 40 [Arabidopsis thaliana] [NCBI NR]
  • gi|15220859|ref|NP_178199.1| WRKY40; transcription factor [Arabidopsis thaliana] [NCBI NR]
  • Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1 [Swiss-Prot]
  • (Q9SAH7) Probable WRKY transcription factor 40 (WRKY DNA-binding protein 40) [Swiss-Prot]
  • WRKY transcription factor 40 [Arabidopsis thaliana]gi|6503295|gb|AAF14671.1| Similar to gb|Z48431 DNA-binding protein from Avena fatua. [Arabidopsis thaliana]gi|20978791|sp|Q9SAH7|WR40_ARATH Probable WRKY transcription factor 40 (WRKY DNA-binding protei [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Probable WRKY transcription factor 40 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATWRKY40, WRKY40 | WRKY40 (WRKY DNA-binding protein 40); transcription factor | chr1:30388726-30390248 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • WRKY40; transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Similar to gb|Z48431 DNA-binding protein from Avena fatua. [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • WRKY transcription factor 40 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative WRKY family transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Probable WRKY transcription factor 40 (WRKY DNA-binding protein 40) [nr-271106-contam.fasta]
  • | Symbols: WRKY40, ATWRKY40 | WRKY DNA-binding protein 40 | chr1:30383834-30385356 FORWARD LENGTH=302 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 302 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: regulation of defense response to virus by host [IGI]
    response to wounding [IEP]
    regulation of transcription, DNA-dependent [ISS]
    response to salicylic acid stimulus [IEP]
    regulation of defense response [IMP]
    defense response to fungus [IEP]
    response to chitin [IEP]
    defense response to bacterium [IEP]
    Molecular Function: transcription factor activity [IDA][ISS]
    protein binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQYSSSLVD TSLDLTIGVT RMRVEEDPPT SALVEELNRV SAENKKLSEM LTLMCDNYNV  60
   61 LRKQLMEYVN KSNITERDQI SPPKKRKSPA REDAFSCAVI GGVSESSSTD QDEYLCKKQR 120
  121 EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK 180
  181 KKVQRSVEDQ SVLVATYEGE HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP 240
  241 VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT 300
  301 EK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..123] deduced N/A No confident structure predictions are available.
    2 View Details [124..219] PSI-BLAST 27.0 Solution Structure of the C-terminal WRKY Domain of AtWRKY4
    3 View Details [220..302] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle