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Protein Overview: VPS45_ARATH

General Information:
Name(s) found: VPS45_ARATH [Swiss-Prot]
Description(s) found:
Found 16 descriptions.
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  • Vacuolar protein sorting-associated protein 45 homolog OS=Arabidopsis thaliana GN=VPS45 PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 569 amino acids

    Gene Ontology:
    Cellular Component: trans-Golgi network [IDA][NAS]
    plant-type vacuole membrane [IDA]
    Biological Process: intracellular protein transport [IGI]
    protein secretion [ISS]
    Molecular Function: protein transporter activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLVTSVRDY INRMLQDISG MKVLILDSET VSNVSIVYSQ SELLQKEVFL VEMIDSISVS  60
   61 KESMSHLKAV YFIRPTSDNI QKLRYQLANP RFGEYHLFFS NLLKDTQIHI LADSDEQEVV 120
  121 QQVQEYYADF VSGDPYHFTL NMASNHLYMI PAVVDPSGLQ RFSDRVVDGI AAVFLALKRR 180
  181 PVIRYQRTSD TAKRIAHETA KLMYQHESAL FDFRRTESSP LLLVIDRRDD PVTPLLNQWT 240
  241 YQAMVHELIG LQDNKVDLKS IGSLPKDQQV EVVLSSEQDA FFKSNMYENF GDIGMNIKRM 300
  301 VDDFQQVAKS NQNIQTVEDM ARFVDNYPEY KKMQGNVSKH VTLVTEMSKL VEARKLMTVS 360
  361 QTEQDLACNG GQGAAYEAVT DLLNNESVSD IDRLRLVMLY ALRYEKENPV QLMQLFNKLA 420
  421 SRSPKYKPGL VQFLLKQAGV EKRTGDLFGN RDLLNIARNM ARGLKGVENV YTQHQPLLFQ 480
  481 TMESITRGRL RDVDYPFVGD HFQQGRPQEV VIFMVGGTTY EESRSVALQN ATNSGVRFIL 540
  541 GGTAVLNSKR FLKDLEEAQR ISRSGSHMV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..569] PSI-BLAST 135.0 Neuronal Sec1, NSec1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • SNARE binding
    		•  4.56428593085019 bayes_pls_golite062009
  • syntaxin binding
    		•  3.46044132736061 bayes_pls_golite062009
  • binding
    		•  2.7837022903231 bayes_pls_golite062009
  • protein binding
    		•  2.77285532000616 bayes_pls_golite062009
  • syntaxin-1 binding
    		•  0.269372794919901 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle