| Protein: | VPS45_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 569 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS45_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
507.0 | [0..1] | [564..1] |
|
Region A: Residues: [1-569] |
1 11 21 31 41 51
| | | | | |
1 MVLVTSVRDY INRMLQDISG MKVLILDSET VSNVSIVYSQ SELLQKEVFL VEMIDSISVS 60
61 KESMSHLKAV YFIRPTSDNI QKLRYQLANP RFGEYHLFFS NLLKDTQIHI LADSDEQEVV 120
121 QQVQEYYADF VSGDPYHFTL NMASNHLYMI PAVVDPSGLQ RFSDRVVDGI AAVFLALKRR 180
181 PVIRYQRTSD TAKRIAHETA KLMYQHESAL FDFRRTESSP LLLVIDRRDD PVTPLLNQWT 240
241 YQAMVHELIG LQDNKVDLKS IGSLPKDQQV EVVLSSEQDA FFKSNMYENF GDIGMNIKRM 300
301 VDDFQQVAKS NQNIQTVEDM ARFVDNYPEY KKMQGNVSKH VTLVTEMSKL VEARKLMTVS 360
361 QTEQDLACNG GQGAAYEAVT DLLNNESVSD IDRLRLVMLY ALRYEKENPV QLMQLFNKLA 420
421 SRSPKYKPGL VQFLLKQAGV EKRTGDLFGN RDLLNIARNM ARGLKGVENV YTQHQPLLFQ 480
481 TMESITRGRL RDVDYPFVGD HFQQGRPQEV VIFMVGGTTY EESRSVALQN ATNSGVRFIL 540
541 GGTAVLNSKR FLKDLEEAQR ISRSGSHMV
|
| Detection Method: |  |
| Confidence: | 135.0 |
| Match: | 1epuA |
| Description: | Neuronal Sec1, NSec1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| SNARE binding | 4.56428593085019 | bayes_pls_golite062009 |
| syntaxin binding | 3.46044132736061 | bayes_pls_golite062009 |
| binding | 2.7837022903231 | bayes_pls_golite062009 |
| protein binding | 2.77285532000616 | bayes_pls_golite062009 |
| syntaxin-1 binding | 0.269372794919901 | bayes_pls_golite062009 |
