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Protein Overview: VPS33_ARATH

General Information:
Name(s) found: VPS33_ARATH [Swiss-Prot]
Description(s) found:
Found 13 descriptions.
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  • Vacuolar protein-sorting-associated protein 33 homolog OS=Arabidopsis thaliana GN=VPS33 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 592 amino acids

    Gene Ontology:
    Cellular Component: plant-type vacuole membrane [IDA]
    Biological Process: vacuole organization [TAS]
    protein secretion [ISS]
    Molecular Function: protein transporter activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQIPSLENA PLNLKSIRDK SERELVNLLK DVRGTKCLVI DPKLSGSVSL IIPTSKLKEL  60
   61 GLELRHLTAE PVQTECTKVV YLVRSQLSFM KFIASHIQND IAKAIQRDYY VYFVPRRSVA 120
  121 CEKILEQEKV HNLVTVKEFP LYMVPLDEDV ISFELELSEK DCLVDGDVSS LWHIAKAIHE 180
  181 LEFSFGVISK MRAKGKASVR VADILNRMQV EEPVNSNDVG RPEVDTLILL DREVDMVTPM 240
  241 CSQLTYEGLI DEILHISNGA VEVDSSVMGA QQEGKKMKVP LNSSDKLFKE TRDLNFEVVV 300
  301 QVLRQKAMTM KEDYTEINST QTVSELKDFV KKLNSLPEMT RHIHLAQHLT TFTSKQSFNS 360
  361 QLDMEQTLVE AENYDICYEY IEEMIHKQEP LTNVLRLLVL FSVTNSGLPK KQFDYIRMEL 420
  421 LHSYGFEHVV TLNNLEKAGL LKKQEFKSNW LTVKRTLKLI VEDTDTSRPN DIAYVYSGYA 480
  481 PLSIRLIQQA IHSGWRPMED ILKLLPGPHL ETKRSGFPSS PSVDSLHGAS NGVADGRRSI 540
  541 VLVVFIGGVT FAEISALRYL ASKEGMAYDL IVATTKIVNG ATLIETFMEK LG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..592] PSI-BLAST 150.0 Neuronal Sec1, NSec1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • SNARE binding
    		•  3.42828022195984 bayes_pls_golite062009
  • binding
    		•  2.7837022903231 bayes_pls_golite062009
  • syntaxin binding
    		•  2.11416428645287 bayes_pls_golite062009
  • protein binding
    		•  1.7224010512877 bayes_pls_golite062009
  • syntaxin-1 binding
    		•  0.269372794919901 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.73

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle