| Protein: | VPS33_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 592 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS33_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
534.0 | [0..3] | [590..1] |
|
Region A: Residues: [1-592] |
1 11 21 31 41 51
| | | | | |
1 MAQIPSLENA PLNLKSIRDK SERELVNLLK DVRGTKCLVI DPKLSGSVSL IIPTSKLKEL 60
61 GLELRHLTAE PVQTECTKVV YLVRSQLSFM KFIASHIQND IAKAIQRDYY VYFVPRRSVA 120
121 CEKILEQEKV HNLVTVKEFP LYMVPLDEDV ISFELELSEK DCLVDGDVSS LWHIAKAIHE 180
181 LEFSFGVISK MRAKGKASVR VADILNRMQV EEPVNSNDVG RPEVDTLILL DREVDMVTPM 240
241 CSQLTYEGLI DEILHISNGA VEVDSSVMGA QQEGKKMKVP LNSSDKLFKE TRDLNFEVVV 300
301 QVLRQKAMTM KEDYTEINST QTVSELKDFV KKLNSLPEMT RHIHLAQHLT TFTSKQSFNS 360
361 QLDMEQTLVE AENYDICYEY IEEMIHKQEP LTNVLRLLVL FSVTNSGLPK KQFDYIRMEL 420
421 LHSYGFEHVV TLNNLEKAGL LKKQEFKSNW LTVKRTLKLI VEDTDTSRPN DIAYVYSGYA 480
481 PLSIRLIQQA IHSGWRPMED ILKLLPGPHL ETKRSGFPSS PSVDSLHGAS NGVADGRRSI 540
541 VLVVFIGGVT FAEISALRYL ASKEGMAYDL IVATTKIVNG ATLIETFMEK LG
|
| Detection Method: |  |
| Confidence: | 150.0 |
| Match: | 1epuA |
| Description: | Neuronal Sec1, NSec1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| SNARE binding | 3.42828022195984 | bayes_pls_golite062009 |
| binding | 2.7837022903231 | bayes_pls_golite062009 |
| syntaxin binding | 2.11416428645287 | bayes_pls_golite062009 |
| protein binding | 1.7224010512877 | bayes_pls_golite062009 |
| syntaxin-1 binding | 0.269372794919901 | bayes_pls_golite062009 |
