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Protein Overview: SYP43_ARATH

General Information:
Name(s) found: SYP43_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|6714439|gb|AAF26126.1|AC011620_2 putative syntaxin protein, AtSNAP33 [Arabidopsis thaliana] [NCBI NR]
  • gi|38503420|sp|Q9SUJ1.2|SYP43_ARATH RecName: Full=Syntaxin-43; Short=AtSYP43 [NCBI NR]
  • gi|30679592|ref|NP_850519.1| SYP43 (SYNTAXIN OF PLANTS 43); SNAP receptor [Arabidopsis thaliana] [NCBI NR]
  • gi|20466514|gb|AAM20574.1| putative syntaxin protein, AtSNAP33 [Arabidopsis thaliana] [NCBI NR]
  • Syntaxin-43 OS=Arabidopsis thaliana GN=SYP43 PE=2 SV=2 [Swiss-Prot]
  • (Q9SUJ1) Syntaxin 43 (AtSYP43) [Swiss-Prot]
  • putative syntaxin protein, AtSNAP33 [Arabidopsis thaliana]gi|20466514|gb|AAM20574.1| putative syntaxin protein, AtSNAP33 [Arabidopsis thaliana]gi|38503420|sp|Q9SUJ1|SY43_ARATH Syntaxin 43 (AtSYP43)gi|30679592|ref|NP_850519.1| syntaxin, putative [Arabid [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Splice Isoform 1 of Syntaxin 43 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATSYP43, SYP43 | SYP43 (syntaxin 43); SNAP receptor | chr3:1685268-1687235 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • SYP43; t-SNARE [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative syntaxin protein, AtSNAP33 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Syntaxin-43 (AtSYP43) [nr-271106-contam.fasta]
  • | Symbols: SYP43, ATSYP43 | syntaxin of plants 43 | chr3:1685262-1687229 FORWARD LENGTH=331 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 331 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEA]
    Biological Process: cellular membrane fusion [TAS]
    intracellular protein transport [TAS]
    Molecular Function: SNAP receptor activity [TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATRNRTLLF RKYRNSLRSV RAPMGSSSSS TLTEHNSLTG AKSGLGPVIE MASTSLLNPN  60
   61 RSYAPVSTED PGNSSRGTIT VGLPPDWVDV SEEISVYIQR ARTKMAELGK AHAKALMPSF 120
  121 GDGKEDQHQI ETLTQEVTFL LKKSEKQLQR LSAAGPSEDS NVRKNVQRSL ATDLQNLSME 180
  181 LRKKQSTYLK RLRLQKEDGA DLEMNLNGSR YKAEDDDFDD MVFSEHQMSK IKKSEEISIE 240
  241 REKEIQQVVE SVSELAQIMK DLSALVIDQG TIVDRIDYNI QNVASTVDDG LKQLQKAERT 300
  301 QRQGGMVMCA SVLVILCFIM LVLLILKEIL L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..331] PSI-BLAST 22.045757 Syntaxin 1A N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • SNAP receptor activity
    		•  3.50393203740159 bayes_pls_golite062009
  • binding
    		•  2.18404492932496 bayes_pls_golite062009
  • protein binding
    		•  1.82422117934251 bayes_pls_golite062009
  • phosphatidic acid binding
    		•  1.79882292156155 bayes_pls_golite062009
  • protein transporter activity
    		•  1.74973029929612 bayes_pls_golite062009
  • transporter activity
    		•  1.74189664015129 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.49085442233849 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.13101548288086 bayes_pls_golite062009
  • SNARE binding
    		•  0.71459772253941 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.643064875848901 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.370484918396857 bayes_pls_golite062009
  • channel activity
    		•  0.0647076360772156 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  0.0647076360772156 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  0.0435980899803177 bayes_pls_golite062009
  • excitatory extracellular ligand-gated ion channel activity
    		•  0.0336127041418299 bayes_pls_golite062009
  • extracellular ligand-gated ion channel activity
    		•  0.0336127041418299 bayes_pls_golite062009
  • phospholipid binding
    		•  0.0172309833091902 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.00476738027966683 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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