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Protein Overview: SR54C_ARATH

General Information:
Name(s) found: SR54C_ARATH [Swiss-Prot]
Description(s) found:
Found 18 descriptions.
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  • Signal recognition particle 54 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=FFC PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 564 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    chloroplast [IDA]
    signal recognition particle, chloroplast targeting [IMP]
    signal recognition particle, endoplasmic reticulum targeting [ISS]
    Biological Process: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition [ISS]
    protein import into chloroplast thylakoid membrane [IDA]
    Molecular Function: GTP binding [ISS]
    protein binding [IPI]
    7S RNA binding [ISS]
    mRNA binding [ISS]
    signal sequence binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEALQFSSVN RVPCTLSCTG NRRIKAAFSS AFTGGTINSA SLSSSRNLST REIWSWVKSK  60
   61 TVVGHGRYRR SQVRAEMFGQ LTGGLEAAWS KLKGEEVLTK DNIAEPMRDI RRALLEADVS 120
  121 LPVVRRFVQS VSDQAVGMGV IRGVKPDQQL VKIVHDELVK LMGGEVSELQ FAKSGPTVIL 180
  181 LAGLQGVGKT TVCAKLACYL KKQGKSCMLI AGDVYRPAAI DQLVILGEQV GVPVYTAGTD 240
  241 VKPADIAKQG LKEAKKNNVD VVIMDTAGRL QIDKGMMDEL KDVKKFLNPT EVLLVVDAMT 300
  301 GQEAAALVTT FNVEIGITGA ILTKLDGDSR GGAALSVKEV SGKPIKLVGR GERMEDLEPF 360
  361 YPDRMAGRIL GMGDVLSFVE KATEVMRQED AEDLQKKIMS AKFDFNDFLK QTRAVAKMGS 420
  421 MTRVLGMIPG MGKVSPAQIR EAEKNLLVME AMIEVMTPEE RERPELLAES PERRKRIAKD 480
  481 SGKTEQQVSA LVAQIFQMRV KMKNLMGVME GGSIPALSGL EDALKAEQKA PPGTARRKRK 540
  541 ADSRKKFVES ASSKPGPRGF GSGN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..72] PSI-BLAST 50.69897 Crystal Structure Analysis of ClpB
    2 View Details [73..564] PSI-BLAST 116.0 No description for 2j289 was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.84

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle