YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: SR34_ARATH

General Information:
Name(s) found: SR34_ARATH [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • gi|6056417|gb|AAF02881.1|AC009525_15 alternative splicing factor SF2a [Arabidopsis thaliana] [NCBI NR]
  • gi|3929368|sp|O22315.1|SFRS1_ARATH RecName: Full=Pre-mRNA-splicing factor SF2; AltName: Full=SR1 protein [NCBI NR]
  • gi|30678398|ref|NP_563665.3| SR1; RNA binding / nucleic acid binding / nucleotide binding [Arabidopsis thaliana] [NCBI NR]
  • gi|30678391|ref|NP_850933.1| SR1; RNA binding / nucleic acid binding / nucleotide binding [Arabidopsis thaliana] [NCBI NR]
  • gi|26451794|dbj|BAC42991.1| putative ribonucleoprotein SF-2 [Arabidopsis thaliana] [NCBI NR]
  • pir||F86158 alternative splicing factor SF2a [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|2443472|gb|AAB71385.1| ASF/SF2 homolog [Arabidopsis thaliana] [NCBI NR]
  • gi|21554051|gb|AAM63132.1| SF2/ASF-like splicing modulator Srp30, putative [Arabidopsis thaliana] [NCBI NR]
  • Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1 [Swiss-Prot]
  • Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana GN=SR34 PE=1 SV=1 [Swiss-Prot]
  • (O22315) Pre-mRNA splicing factor SF2 (SR1 protein) [Swiss-Prot]
  • alternative splicing factor SF2a [Arabidopsis thaliana]gi|21554051|gb|AAM63132.1| SF2/ASF-like splicing modulator Srp30, putative [Arabidopsis thaliana]gi|26451794|dbj|BAC42991.1| putative ribonucleoprotein SF-2 [Arabidopsis thaliana]gi|25386574|pir||F [nrdb_11152004_Chlamydomonas]
  • | Symbols: ATSRP34, SRP34, SR1 | SR1 (splicing factor 2); RNA binding | chr1:626918-629583 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative ribonucleoprotein SF-2 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ASF/SF2 homolog [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • alternative splicing factor SF2a [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • SF2/ASF-like splicing modulator Srp30, putative [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • SR1; RNA binding / nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Pre-mRNA-splicing factor SF2 (SR1 protein) [nr-271106-contam.fasta]
  • SR1; RNA binding / nucleic acid binding / nucleotide binding [Arabidopsis thaliana] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:626918-629583 FORWARD LENGTH=303 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 303 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISS]
    nuclear speck [IDA]
    interchromatin granule [IDA]
    Biological Process: NONE FOUND
    Molecular Function: nucleotide binding [IEA]
    nucleic acid binding [IEA]
    RNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRSSRTVY VGNLPGDIRE REVEDLFSKY GPVVQIDLKV PPRPPGYAFV EFDDARDAED  60
   61 AIHGRDGYDF DGHRLRVELA HGGRRSSDDT RGSFNGGGRG GGRGRGDGGS RGPSRRSEFR 120
  121 VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE 180
  181 FRNAFSNGYV RVREYDSRKD SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS 240
  241 SRRSPAKSTS RSPGPRSKSR SPSPRRSRSR SRSPLPSVQK EGSKSPSKPS PAKSPIHTRS 300
  301 PSR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..203] PSI-BLAST 32.522879 Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI)
    2 View Details [204..303] FFAS03 1.31 No description for 2j63A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle