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Protein Overview: RRFC_ARATH

General Information:
Name(s) found: RRFC_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|27363350|gb|AAO11594.1| At3g63190/F16M2_40 [Arabidopsis thaliana] [NCBI NR]
  • gi|22001953|sp|Q9M1X0.2|RRFC_ARATH RecName: Full=Ribosome-recycling factor, chloroplastic; Short=RRF; AltName: Full=Ribosome-releasing factor, chloroplastic; AltName: Full=CpFrr; AltName: Full=RRFHCP; Flags: Precursor [NCBI NR]
  • gi|20260166|gb|AAM12981.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18412657|ref|NP_567141.1| RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR) [Arabidopsis thaliana] [NCBI NR]
  • gi|15982709|gb|AAL09724.1| AT3g63190/F16M2_40 [Arabidopsis thaliana] [NCBI NR]
  • gi|13926252|gb|AAK49599.1|AF372883_1 AT3g63190/F16M2_40 [Arabidopsis thaliana] [NCBI NR]
  • (Q9M1X0) Ribosome recycling factor, chloroplast precursor (Ribosome releasing factor, chloroplast) (RRF) (CpFrr) (RRFHCP) [Swiss-Prot]
  • Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana GN=RRF PE=2 SV=2 [Swiss-Prot]
  • putative protein [Arabidopsis thaliana]gi|27363350|gb|AAO11594.1| At3g63190/F16M2_40 [Arabidopsis thaliana]gi|15982709|gb|AAL09724.1| AT3g63190/F16M2_40 [Arabidopsis thaliana]gi|22001953|sp|Q9M1X0|RRF_ARATH Ribosome recycling factor, chloroplast precur [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Ribosome recycling factor, chloroplast precursor [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: RRF | RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR) | chr3:23353836-23355615 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • AT3g63190/F16M2_40 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At3g63190/F16M2_40 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Ribosome recycling factor, chloroplast precursor (Ribosome-releasing factor, chloroplast) (RRF) (CpFrr) (RRFHCP) [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: RRF, HFP108, cpRRF, AtcpRRF | ribosome recycling factor, chloroplast precursor | chr3:23342861-23344640 REVERSE LENGTH=275 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 275 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    chloroplast [IDA]
    thylakoid [IDA]
    Biological Process: defense response to fungus, incompatible interaction [IDA]
    defense response to bacterium [IEP]
    translation [ISS]
    Molecular Function: copper ion binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASFSSTAP TTPVLRFRAN YSKPLLSLPD SCLRIISSAI SPSTRLIACS FKTDKLPLGA  60
   61 GVNLSGGPVV KRSLQKRLVI RSATIEEIEA EKSAIETDVK SKMEKTIETL RTSFNSIRTG 120
  121 RSNAAMLDKI EVEYYGSPVS LKSIAQISTP DGSSLLLQPY DKSSLKAIEK AIVNSDLGVT 180
  181 PNNDGDVIRL SLPPLTSDRR KELSKVVAKQ SEEGKVALRN IRRDALKSYD KLEKEKKLSE 240
  241 DNVKDLSSDL QKLIDVYMKK IEELYKQKEK ELMKV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..90] deduced N/A Confident ab initio structure predictions are available.
    2 View Details [91..275] PSI-BLAST 71.69897 Ribosome recycling factor, RRF


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle