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Protein Overview: RL52_ARATH

General Information:
Name(s) found: RL52_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|30984512|gb|AAP42719.1| At5g39740 [Arabidopsis thaliana] [NCBI NR]
  • gi|20260448|gb|AAM13122.1| ribosomal protein L5 - like [Arabidopsis thaliana] [NCBI NR]
  • gi|19884108|sp|P49227.3|RL52_ARATH RecName: Full=60S ribosomal protein L5-2 [NCBI NR]
  • gi|19310482|gb|AAL84975.1| AT5g39740/MKM21_30 [Arabidopsis thaliana] [NCBI NR]
  • gi|15242467|ref|NP_198790.1| 60S ribosomal protein L5 (RPL5B) [Arabidopsis thaliana] [NCBI NR]
  • gi|10177974|dbj|BAB11380.1| 60S ribosomal protein L5 [Arabidopsis thaliana] [NCBI NR]
  • (P49227) 60S ribosomal protein L5 [Swiss-Prot]
  • 60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3 [Swiss-Prot]
  • At5g39740 [Arabidopsis thaliana]gi|10177974|dbj|BAB11380.1| 60S ribosomal protein L5 [Arabidopsis thaliana]gi|20260448|gb|AAM13122.1| ribosomal protein L5 - like [Arabidopsis thaliana]gi|19310482|gb|AAL84975.1| AT5g39740/MKM21_30 [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 60S ribosomal protein L5 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | 60S ribosomal protein L5 (RPL5B) | chr5:15920593-15922413 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • 60S ribosomal protein L5-2 [nr-271106-contam.fasta]
  • At5g39740 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AT5g39740/MKM21_30 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • 60S ribosomal protein L5 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ribosomal protein L5 - like [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • 5S rRNA binding / structural constituent of ribosome [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: OLI7, RPL5B | ribosomal protein L5 B | chr5:15903365-15905185 FORWARD LENGTH=301 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • | Symbols: RPL5B | ribosomal protein L5 B | chr5:15903484-15905185 FORWARD LENGTH=301 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 301 amino acids

    Gene Ontology:
    Cellular Component: cytosolic ribosome [IDA]
    cytosolic large ribosomal subunit [IDA]
    nucleolus [IDA]
    ribosome [ISS]
    vacuole [IDA]
    plasma membrane [IDA]
    Biological Process: cell proliferation [IMP]
    ribosome biogenesis [ISS]
    leaf morphogenesis [IMP]
    translation [ISS]
    Molecular Function: structural constituent of ribosome [IEA][ISS]
    5S rRNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFVKSSKSN AYFKRYQVKF RRRRDGKTDY RARIRLINQD KNKYNTPKYR FVVRFTNKDI  60
   61 VAQIVSASIA GDIVKASAYA HELPQYGLTV GLTNYAAAYC TGLLLARRVL KMLEMDDEYE 120
  121 GNVEATGEDF SVEPTDSRRP FRALLDVGLI RTTTGNRVFG ALKGALDGGL DIPHSDKRFA 180
  181 GFHKENKQLD AEIHRNYIYG GHVSNYMKLL GEDEPEKLQT HFSAYIKKGV EAESIEEMYK 240
  241 KVHAAIRAEP NHKKTEKSAP KEHKRYNLKK LTYEERKNKL IERVKALNGA GGDDDDEDDE 300
  301 E

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..227] PSI-BLAST 91.0 Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
    2 View Details [228..301] MSA 2.047988 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.89

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle