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Protein Overview: RS121_ARATH

General Information:
Name(s) found: RS121_ARATH [Swiss-Prot]
Description(s) found:
Found 19 descriptions.
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  • 40S ribosomal protein S12-1 OS=Arabidopsis thaliana GN=RPS12A PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 144 amino acids

    Gene Ontology:
    Cellular Component: cytosolic ribosome [IDA]
    cytosolic small ribosomal subunit [IDA]
    Biological Process: response to salt stress [IEP]
    response to cadmium ion [IEP]
    translation [ISS]
    Molecular Function: structural constituent of ribosome [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGDEAAPVV VPPPVAEPAA IPEDMDLMTA LELTLRKARA YGGVVRGLHE CAKLIEKRVA  60
   61 QLVVLAEDCN QPDYVKLVKA LCADHEVRLL TVPSAKTLGE WAGLCKIDSE GNARKVVGCS 120
  121 CLVVKDFGEE TTALSIVNKH IASQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..144] PSI-BLAST 23.522879 Crystal Structure of High Mobility Like Protein, NHP2, putative from Cryptosporidium parvum

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  7.52323416912124 bayes_pls_golite062009
  • structural molecule activity
    		•  6.97581143389173 bayes_pls_golite062009
  • RNA binding
    		•  3.17103797166833 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.89156659324072 bayes_pls_golite062009
  • binding
    		•  1.71406048714822 bayes_pls_golite062009
    		• 0.61812240381857 bayes_pls_golite062009
  • protein binding
    		•  0.281497939080747 bayes_pls_golite062009
  • catalytic activity
    		•  0.264002643439785 bayes_pls_golite062009
  • mRNA binding
    		•  0.259807967594031 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle