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Protein Overview: PSMD6_ARATH

General Information:
Name(s) found: PSMD6_ARATH [Swiss-Prot]
Description(s) found:
Found 19 descriptions.
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  • 26S proteasome non-ATPase regulatory subunit 6 homolog OS=Arabidopsis thaliana GN=RPN7 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 387 amino acids

    Gene Ontology:
    Cellular Component: nucleus [TAS]
    membrane [IDA]
    proteasome regulatory particle, lid subcomplex [ISS]
    plasma membrane [IDA]
    Biological Process: protein catabolic process [TAS]
    ubiquitin-dependent protein catabolic process [TAS]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGGAEGSQQ PHLILANKLF LLTHPDVPDI EKVQLKSEVL DFIRSHGMAP LYETLIASSV  60
   61 LDLDQSLLES MRAANEEELK KLDEKIADAE ENLGESEVRE AHLAKALYFI RISDKEKALE 120
  121 QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV 180
  181 YEGLYCMSTR NFKKAASLFL DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD 240
  241 APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV 300
  301 VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK 360
  361 NALYQATIKQ GDFLLNRIQK LSRVIDL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..205] PSI-BLAST 6.09691 Crystal structure of an 8 repeat consensus TPR superhelix (trigonal crystal form)
    2 View Details [206..272] deduced N/A No confident structure predictions are available.
    3 View Details [273..387] PSI-BLAST 10.69897 Solution structure of the PCI domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle