YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: PLY13_ARATH

General Information:
Name(s) found: PLY13_ARATH [Swiss-Prot]
Description(s) found:
Found 17 descriptions.
SHOW ALL
  • Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 501 amino acids

    Gene Ontology:
    Cellular Component: anchored to plasma membrane [ISS]
    anchored to membrane [TAS]
    Biological Process: cell wall modification involved in multidimensional cell growth [IMP]
    defense response, incompatible interaction [IMP]
    Molecular Function: pectate lyase activity [ISS]
    lyase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLQNFSNTI FLLCLFFTLL SATKPLNLTL PHQHPSPDSV ALHVIRSVNE SLARRQLSSP  60
   61 SSSSSSSSSS SSSSCRTGNP IDDCWRCSDA DWSTNRQRLA DCSIGFGHGT LGGKNGKIYV 120
  121 VTDSSDNNPT NPTPGTLRYG VIQEEPLWIV FSSNMLIRLK QELIINSYKT LDGRGSAVHI 180
  181 TGNGCLTLQY VQHIIIHNLH IYDCKPSAGF EKRGRSDGDG ISIFGSQKIW VDHCSMSHCT 240
  241 DGLIDAVMGS TAITISNNYF THHDEVMLLG HDDNYAPDTG MQVTIAFNHF GQGLVQRMPR 300
  301 CRRGYIHVVN NDFTEWKMYA IGGSGNPTIN SQGNRYSAPS DPSAKEVTKR VDSKDDGEWS 360
  361 NWNWRTEGDL MENGAFFVAS GEGMSSMYSK ASSVDPKAAS LVDQLTRNAG VFGGPRDDQG 420
  421 QSGNSYSPYG GDGGGGGSSG GSSGGGMDVM GGTTRGSSSS SGDDSNVFQM IFGSDAPSRP 480
  481 RLTLLFSLLM ISVLSLSTLL L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..417] PSI-BLAST 76.69897 1.7 Angstrom Crystal Structure of jun a 1, the major allergen from cedar pollen
    2 View Details [418..501] FFAS03 0.965 Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.142826098671881 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle