YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLY13_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.68
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLQNFSNTI FLLCLFFTLL SATKPLNLTL PHQHPSPDSV ALHVIRSVNE SLARRQLSSP  60
   61 SSSSSSSSSS SSSSCRTGNP IDDCWRCSDA DWSTNRQRLA DCSIGFGHGT LGGKNGKIYV 120
  121 VTDSSDNNPT NPTPGTLRYG VIQEEPLWIV FSSNMLIRLK QELIINSYKT LDGRGSAVHI 180
  181 TGNGCLTLQY VQHIIIHNLH IYDCKPSAGF EKRGRSDGDG ISIFGSQKIW VDHCSMSHCT 240
  241 DGLIDAVMGS TAITISNNYF THHDEVMLLG HDDNYAPDTG MQVTIAFNHF GQGLVQRMPR 300
  301 CRRGYIHVVN NDFTEWKMYA IGGSGNPTIN SQGNRYSAPS DPSAKEVTKR VDSKDDGEWS 360
  361 NWNWRTEGDL MENGAFFVAS GEGMSSMYSK ASSVDPKAAS LVDQLTRNAG VFGGPRDDQG 420
  421 QSGNSYSPYG GDGGGGGSSG GSSGGGMDVM GGTTRGSSSS SGDDSNVFQM IFGSDAPSRP 480
  481 RLTLLFSLLM ISVLSLSTLL L

Type	Start	End	Confidence
Signal Peptide	1	22	0.98
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	481	0.99
Transmembrane Helix	482	500	0.66
Cytoplasmic	501	501	0.66