YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: PLY12_ARATH

General Information:
Name(s) found: PLY12_ARATH [Swiss-Prot]
Description(s) found:
Found 12 descriptions.
SHOW ALL
  • Probable pectate lyase 12 OS=Arabidopsis thaliana GN=At3g53190 PE=2 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 483 amino acids

    Gene Ontology:
    Cellular Component: anchored to membrane [TAS]
    Biological Process: biological_process [ND]
    Molecular Function: pectate lyase activity [ISS]
    lyase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLQRSCIVL FFSLFLLVPQ MVFSMLNRTL LLIPHPDPEL VAYQVQWKVN ASITRRQALD  60
   61 TTDQAGSTPC ITGNPIDDCW KCDPNWPNNR QGLADCGIGF GQYALGGKGG QFYFVTDSSD 120
  121 DDAVNPKPGT LRYGVIQEEP LWIVFPSNMM IKLKQELIFN SYKTLDGRGA NVHIVGGGCI 180
  181 TLQYVSNIII HNIHIHHCYQ SGNTNVRSSP THYGFRTKSD GDGISIFGSK DIWIDHCSLS 240
  241 RCKDGLIDAV MGSTGITISN NFFSHHNEVM LLGHSDHYEP DSGMQVTIAF NHFGEKLIQR 300
  301 MPRCRRGYIH VVNNDFTQWE MYAIGGSGNP TINSQGNRYT APTNPFAKEV TKRVETPDGD 360
  361 WKGWNWRSEG DILVNGAFFV ASGEGAEMRY EKAYSVEPKS ASFITQITFH SGVLGVGGRN 420
  421 NNLGMWTTTG SEGTSGLDSY NDYTDEMSGA GSTNRLSFSV LVFLLSSISY LVVFTSSTQM 480
  481 FML

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..483] PSI-BLAST 68.69897 1.7 Angstrom Crystal Structure of jun a 1, the major allergen from cedar pollen

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.142826098671881 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle