YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLY12_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.89
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLQRSCIVL FFSLFLLVPQ MVFSMLNRTL LLIPHPDPEL VAYQVQWKVN ASITRRQALD  60
   61 TTDQAGSTPC ITGNPIDDCW KCDPNWPNNR QGLADCGIGF GQYALGGKGG QFYFVTDSSD 120
  121 DDAVNPKPGT LRYGVIQEEP LWIVFPSNMM IKLKQELIFN SYKTLDGRGA NVHIVGGGCI 180
  181 TLQYVSNIII HNIHIHHCYQ SGNTNVRSSP THYGFRTKSD GDGISIFGSK DIWIDHCSLS 240
  241 RCKDGLIDAV MGSTGITISN NFFSHHNEVM LLGHSDHYEP DSGMQVTIAF NHFGEKLIQR 300
  301 MPRCRRGYIH VVNNDFTQWE MYAIGGSGNP TINSQGNRYT APTNPFAKEV TKRVETPDGD 360
  361 WKGWNWRSEG DILVNGAFFV ASGEGAEMRY EKAYSVEPKS ASFITQITFH SGVLGVGGRN 420
  421 NNLGMWTTTG SEGTSGLDSY NDYTDEMSGA GSTNRLSFSV LVFLLSSISY LVVFTSSTQM 480
  481 FML

Type	Start	End	Confidence
Signal Peptide	1	24	0.98
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	457	0.98
Transmembrane Helix	458	478	0.81
Cytoplasmic	479	483	0.64