YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: PHYD_ARATH

General Information:
Name(s) found: PHYD_ARATH [Swiss-Prot]
Description(s) found:
Found 14 descriptions.
SHOW ALL
  • Phytochrome D OS=Arabidopsis thaliana GN=PHYD PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 1164 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: red or far-red light signaling pathway [IGI]
    regulation of transcription, DNA-dependent [ISS]
    Molecular Function: G-protein coupled photoreceptor activity [ISS]
    red or far-red light photoreceptor activity [IGI]
    signal transducer activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSGGGSKTS GGEAASSGHR RSRHTSAAEQ AQSSANKALR SQNQQPQNHG GGTESTNKAI  60
   61 QQYTVDARLH AVFEQSGESG KSFDYSQSLK TAPYDSSVPE QQITAYLSRI QRGGYTQPFG 120
  121 CLIAVEESTF TIIGYSENAR EMLGLMSQSV PSIEDKSEVL TIGTDLRSLF KSSSYLLLER 180
  181 AFVAREITLL NPIWIHSNNT GKPFYAILHR VDVGILIDLE PARTEDPALS IAGAVQSQKL 240
  241 AVRAISHLQS LPSGDIKLLC DTVVESVRDL TGYDRVMVYK FHEDEHGEVV AESKRNDLEP 300
  301 YIGLHYPATD IPQASRFLFK QNRVRMIVDC YASPVRVVQD DRLTQFICLV GSTLRAPHGC 360
  361 HAQYMTNMGS IASLAMAVII NGNEEDGNGV NTGGRNSMRL WGLVVCHHTS ARCIPFPLRY 420
  421 ACEFLMQAFG LQLNMELQLA LQVSEKRVLR MQTLLCDMLL RDSPAGIVTQ RPSIMDLVKC 480
  481 NGAAFLYQGK YYPLGVTPTD SQINDIVEWL VANHSDSTGL STDSLGDAGY PRAAALGDAV 540
  541 CGMAVACITK RDFLFWFRSH TEKEIKWGGA KHHPEDKDDG QRMNPRSSFQ TFLEVVKSRC 600
  601 QPWETAEMDA IHSLQLILRD SFKESEAMDS KAAAAGAVQP HGDDMVQQGM QEIGAVAREM 660
  661 VRLIETATVP IFAVDIDGCI NGWNAKIAEL TGLSVEDAMG KSLVRELIYK EYKETVDRLL 720
  721 SCALKGDEGK NVEVKLKTFG SELQGKAMFV VVNACSSKDY LNNIVGVCFV GQDVTGHKIV 780
  781 MDKFINIQGD YKAIIHSPNP LIPPIFAADE NTCCLEWNTA MEKLTGWPRS EVIGKLLVRE 840
  841 VFGSYCRLKG PDALTKFMIV LHNAIGGQDT DKFPFPFFDR KGEFIQALLT LNKRVSIDGK 900
  901 IIGAFCFLQI PSPELQQALE VQRRQESEYF SRRKELAYIF QVIKNPLSGL RFTNSLLEDM 960
  961 DLNEDQKQLL ETSVSCEKQI SKIVGDMDVK SIDDGSFLLE RTEFFIGNVT NAVVSQVMLV1020
 1021 VRERNLQLIR NIPTEVKSMA VYGDQIRLQQ VLAEFLLSIV RYAPMEGSVE LHLCPTLNQM1080
 1081 ADGFSAVRLE FRMACAGEGV PPEKVQDMFH SSRWTSPEGL GLSVCRKILK LMNGGVQYIR1140
 1141 EFERSYFLIV IELPVPLMMM MPSS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..92] deduced N/A No confident structure predictions are available.
    2 View Details [93..624] PSI-BLAST 115.0 No description for 2veaA was found.
    3 View Details [625..775] PSI-BLAST 6.221849 No description for 2gj3A was found.
    4 View Details [776..911] PSI-BLAST 7.0 No description for 2cmnA was found.
    5 View Details [912..1164] PSI-BLAST 37.69897 Structure of the entire cytoplasmic portion of a sensor histidine kinase protein


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle