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View Structure Prediction Details

Protein: PHYD_ARATH
Organism: Arabidopsis thaliana
Length: 1164 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for PHYD_ARATH.

Predicted Domain #1
Region A:
Residues: [1-92]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSGGGSKTS GGEAASSGHR RSRHTSAAEQ AQSSANKALR SQNQQPQNHG GGTESTNKAI  60
   61 QQYTVDARLH AVFEQSGESG KSFDYSQSLK TA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [93-624]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PYDSSVPEQQ ITAYLSRIQR GGYTQPFGCL IAVEESTFTI IGYSENAREM LGLMSQSVPS  60
   61 IEDKSEVLTI GTDLRSLFKS SSYLLLERAF VAREITLLNP IWIHSNNTGK PFYAILHRVD 120
  121 VGILIDLEPA RTEDPALSIA GAVQSQKLAV RAISHLQSLP SGDIKLLCDT VVESVRDLTG 180
  181 YDRVMVYKFH EDEHGEVVAE SKRNDLEPYI GLHYPATDIP QASRFLFKQN RVRMIVDCYA 240
  241 SPVRVVQDDR LTQFICLVGS TLRAPHGCHA QYMTNMGSIA SLAMAVIING NEEDGNGVNT 300
  301 GGRNSMRLWG LVVCHHTSAR CIPFPLRYAC EFLMQAFGLQ LNMELQLALQ VSEKRVLRMQ 360
  361 TLLCDMLLRD SPAGIVTQRP SIMDLVKCNG AAFLYQGKYY PLGVTPTDSQ INDIVEWLVA 420
  421 NHSDSTGLST DSLGDAGYPR AAALGDAVCG MAVACITKRD FLFWFRSHTE KEIKWGGAKH 480
  481 HPEDKDDGQR MNPRSSFQTF LEVVKSRCQP WETAEMDAIH SLQLILRDSF KE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 115.0
Match: 2veaA
Description: No description for 2veaA was found.

Predicted Domain #3
Region A:
Residues: [625-775]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEAMDSKAAA AGAVQPHGDD MVQQGMQEIG AVAREMVRLI ETATVPIFAV DIDGCINGWN  60
   61 AKIAELTGLS VEDAMGKSLV RELIYKEYKE TVDRLLSCAL KGDEGKNVEV KLKTFGSELQ 120
  121 GKAMFVVVNA CSSKDYLNNI VGVCFVGQDV T

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.221849
Match: 2gj3A
Description: No description for 2gj3A was found.

Predicted Domain #4
Region A:
Residues: [776-911]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GHKIVMDKFI NIQGDYKAII HSPNPLIPPI FAADENTCCL EWNTAMEKLT GWPRSEVIGK  60
   61 LLVREVFGSY CRLKGPDALT KFMIVLHNAI GGQDTDKFPF PFFDRKGEFI QALLTLNKRV 120
  121 SIDGKIIGAF CFLQIP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.0
Match: 2cmnA
Description: No description for 2cmnA was found.

Predicted Domain #5
Region A:
Residues: [912-1164]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPELQQALEV QRRQESEYFS RRKELAYIFQ VIKNPLSGLR FTNSLLEDMD LNEDQKQLLE  60
   61 TSVSCEKQIS KIVGDMDVKS IDDGSFLLER TEFFIGNVTN AVVSQVMLVV RERNLQLIRN 120
  121 IPTEVKSMAV YGDQIRLQQV LAEFLLSIVR YAPMEGSVEL HLCPTLNQMA DGFSAVRLEF 180
  181 RMACAGEGVP PEKVQDMFHS SRWTSPEGLG LSVCRKILKL MNGGVQYIRE FERSYFLIVI 240
  241 ELPVPLMMMM PSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.69897
Match: 2c2aA
Description: Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle