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Protein Overview: LCYB_ARATH

General Information:
Name(s) found: LCYB_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9049484|gb|AAF82388.1|AF117256_1 lycopene beta cyclase [Arabidopsis thaliana] [NCBI NR]
  • gi|6056202|gb|AAF02819.1|AC009400_15 lycopene beta cyclase [Arabidopsis thaliana] [NCBI NR]
  • gi|20259239|gb|AAM14335.1| putative lycopene beta cyclase [Arabidopsis thaliana] [NCBI NR]
  • gi|16604609|gb|AAL24097.1| putative lycopene beta cyclase [Arabidopsis thaliana] [NCBI NR]
  • gi|15228239|ref|NP_187634.1| LYC (LYCOPENE CYCLASE); lycopene beta cyclase [Arabidopsis thaliana] [NCBI NR]
  • gi|1399183|gb|AAB53337.1| Lycopene beta cyclase [NCBI NR]
  • gi|12643749|sp|Q38933.1|LCYB_ARATH RecName: Full=Lycopene beta cyclase, chloroplastic; Flags: Precursor [NCBI NR]
  • Lycopene beta cyclase, chloroplastic OS=Arabidopsis thaliana GN=LCY1 PE=1 SV=1 [Swiss-Prot]
  • (Q38933) Lycopene beta cyclase, chloroplast precursor (EC 1.14.-.-) [athaliana3702.FASTAC.txt]
  • lycopene beta cyclase [Arabidopsis thaliana]gi|20259239|gb|AAM14335.1| putative lycopene beta cyclase [Arabidopsis thaliana]gi|16604609|gb|AAL24097.1| putative lycopene beta cyclase [Arabidopsis thaliana]gi|1399183|gb|AAB53337.1| Lycopene beta cyclase [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Lycopene beta cyclase, chloroplast precursor [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: LYC | LYC (LYCOPENE CYCLASE); lycopene beta cyclase | chr3:3164345-3165850 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Lycopene beta cyclase [nr-271106-contam.fasta]
  • lycopene beta cyclase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Lycopene beta cyclase, chloroplast precursor [nr-271106-contam.fasta]
  • LYC (LYCOPENE CYCLASE); lycopene beta cyclase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative lycopene beta cyclase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: LYC | lycopene cyclase | chr3:3164340-3165845 REVERSE LENGTH=501 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Lycopene beta cyclase, chloroplastic OS=Arabidopsis thaliana GN=LCY1 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 501 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [TAS]
    Biological Process: carotene biosynthetic process [IGI]
    Molecular Function: lycopene beta cyclase activity [IGI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTLLKTPNK LDFFIPQFHG FERLCSNNPY HSRVRLGVKK RAIKIVSSVV SGSAALLDLV  60
   61 PETKKENLDF ELPLYDTSKS QVVDLAIVGG GPAGLAVAQQ VSEAGLSVCS IDPSPKLIWP 120
  121 NNYGVWVDEF EAMDLLDCLD TTWSGAVVYV DEGVKKDLSR PYGRVNRKQL KSKMLQKCIT 180
  181 NGVKFHQSKV TNVVHEEANS TVVCSDGVKI QASVVLDATG FSRCLVQYDK PYNPGYQVAY 240
  241 GIVAEVDGHP FDVDKMVFMD WRDKHLDSYP ELKERNSKIP TFLYAMPFSS NRIFLEETSL 300
  301 VARPGLRMED IQERMAARLK HLGINVKRIE EDERCVIPMG GPLPVLPQRV VGIGGTAGMV 360
  361 HPSTGYMVAR TLAAAPIVAN AIVRYLGSPS SNSLRGDQLS AEVWRDLWPI ERRRQREFFC 420
  421 FGMDILLKLD LDATRRFFDA FFDLQPHYWH GFLSSRLFLP ELLVFGLSLF SHASNTSRLE 480
  481 IMTKGTVPLA KMINNLVQDR D

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..425] PSI-BLAST 11.0 Crystal structure of the native monooxygenase domain of MICAL at 1.45 A resolution
    2 View Details [426..501] PSI-BLAST 35.154902 No description for 2qa2A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.58

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle