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View Structure Prediction Details

Protein: LCYB_ARATH
Organism: Arabidopsis thaliana
Length: 501 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LCYB_ARATH.

Description E-value Query
Range
Subject
Range
gi|735882 - gi|735882|gb|AAA81880.1| lycopene cyclase
348.0 [0..1] [501..1]

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Predicted Domain #1
Region A:
Residues: [1-425]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTLLKTPNK LDFFIPQFHG FERLCSNNPY HSRVRLGVKK RAIKIVSSVV SGSAALLDLV  60
   61 PETKKENLDF ELPLYDTSKS QVVDLAIVGG GPAGLAVAQQ VSEAGLSVCS IDPSPKLIWP 120
  121 NNYGVWVDEF EAMDLLDCLD TTWSGAVVYV DEGVKKDLSR PYGRVNRKQL KSKMLQKCIT 180
  181 NGVKFHQSKV TNVVHEEANS TVVCSDGVKI QASVVLDATG FSRCLVQYDK PYNPGYQVAY 240
  241 GIVAEVDGHP FDVDKMVFMD WRDKHLDSYP ELKERNSKIP TFLYAMPFSS NRIFLEETSL 300
  301 VARPGLRMED IQERMAARLK HLGINVKRIE EDERCVIPMG GPLPVLPQRV VGIGGTAGMV 360
  361 HPSTGYMVAR TLAAAPIVAN AIVRYLGSPS SNSLRGDQLS AEVWRDLWPI ERRRQREFFC 420
  421 FGMDI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.0
Match: 2bryA
Description: Crystal structure of the native monooxygenase domain of MICAL at 1.45 A resolution
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [426-501]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLKLDLDATR RFFDAFFDLQ PHYWHGFLSS RLFLPELLVF GLSLFSHASN TSRLEIMTKG  60
   61 TVPLAKMINN LVQDRD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.154902
Match: 2qa2A
Description: No description for 2qa2A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle