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Protein Overview: DEF1B_ARATH

General Information:
Name(s) found: DEF1B_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|7573315|emb|CAB87633.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|39932734|sp|Q9FUZ2.2|DEF1B_ARATH RecName: Full=Peptide deformylase 1B, chloroplastic; Short=PDF 1B; Short=AtPDF1B; Short=AtDEF2; AltName: Full=Polypeptide deformylase; Flags: Precursor [NCBI NR]
  • gi|30684999|ref|NP_850821.1| PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide deformylase [Arabidopsis thaliana] [NCBI NR]
  • gi|20465677|gb|AAM20307.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15292891|gb|AAK92816.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15241461|ref|NP_196970.1| PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide deformylase [Arabidopsis thaliana] [NCBI NR]
  • gi|11358034|pir||T48639 hypothetical protein T15N1.150 - Arabidopsis thaliana [NCBI NR]
  • Peptide deformylase, chloroplastic OS=Arabidopsis thaliana GN=PDF1B PE=2 SV=2 [Swiss-Prot]
  • Peptide deformylase 1B, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PDF1B PE=1 SV=2 [Swiss-Prot]
  • (Q9FUZ2) Peptide deformylase, chloroplast precursor (EC 3.5.1.88) (PDF) (Polypeptide deformylase) [athaliana3702.FASTAC.txt]
  • unknown protein [Arabidopsis thaliana]gi|15292891|gb|AAK92816.1| unknown protein [Arabidopsis thaliana]gi|7573315|emb|CAB87633.1| putative protein [Arabidopsis thaliana]gi|39932734|sp|Q9FUZ2|DEFC_ARATH Peptide deformylase, chloroplast precursor (PDF) ( [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Peptide deformylase, chloroplast precursor [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: DEF2, PDF1B | PDF1B (PEPTIDE DEFORMYLASE 1B); peptide deformylase | chr5:4727132-4728674 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Peptide deformylase, chloroplast precursor (PDF) (Polypeptide deformylase) [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide deformylase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein T15N1.150 - Arabidopsis thaliana [nr-271106-contam.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: PDF1B, DEF2, ATDEF2 | peptide deformylase 1B | chr5:4727129-4728671 REVERSE LENGTH=273 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 273 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    Biological Process: translation [IEA][ISS]
    Molecular Function: peptide deformylase activity [IDA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVCNCFLQA PPLSRILLPV LSRRATTLSA GYGRLKSTVT FCSTVNRTSP LTSSVRAEVK  60
   61 RVSRKDDKVA SATDVQFETP LKIVEYPDPI LRAKNKRIDI FDENLKNLVD AMFDVMYKTD 120
  121 GIGLSAPQVG LNVQLMVFNP AGEPGEGKEI VLVNPKIKKY SDKLVPFDEG CLSFPGIYAE 180
  181 VVRPQSVKID ARDITGERFS ISLSRLPARI FQHEYDHLEG VLFFDRMTDQ VLDSIREELE 240
  241 ALEKKYEEKT GLPSPERVEA RQKRKAGVGF GKR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..273] PSI-BLAST 70.0 Crystal Structure of P.aeruginosa Peptide deformylase Complexed with Antibiotic Actinonin

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  2.58820956037645 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
    		•  2.29341894440799 bayes_pls_golite062009
  • peptide deformylase activity
    		•  2.09701270257336 bayes_pls_golite062009
  • hydrolase activity
    		•  1.74603757697733 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
    		•  1.59643176725105 bayes_pls_golite062009
  • formylmethionine deformylase activity
    		•  0.90550535791718 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.83

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle