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Protein Overview: DCE1_ARATH

General Information:
Name(s) found: DCE1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|24111355|gb|AAN46801.1| At5g17330/MKP11_18 [Arabidopsis thaliana] [NCBI NR]
  • gi|21264439|sp|Q42521.2|DCE1_ARATH RecName: Full=Glutamate decarboxylase 1; Short=GAD 1 [NCBI NR]
  • gi|20453187|gb|AAM19834.1| AT5g17330/MKP11_18 [Arabidopsis thaliana] [NCBI NR]
  • gi|15237949|ref|NP_197235.1| GAD; calmodulin binding / glutamate decarboxylase [Arabidopsis thaliana] [NCBI NR]
  • gi|10177078|dbj|BAB10520.1| glutamate decarboxylase 1 (GAD 1) [Arabidopsis thaliana] [NCBI NR]
  • Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2 [Swiss-Prot]
  • (Q42521) Glutamate decarboxylase 1 (EC 4.1.1.15) (GAD 1) [athaliana3702.FASTAC.txt]
  • At5g17330/MKP11_18 [Arabidopsis thaliana]gi|20453187|gb|AAM19834.1| AT5g17330/MKP11_18 [Arabidopsis thaliana]gi|21264439|sp|Q42521|DCE1_ARATH Glutamate decarboxylase 1 (GAD 1)gi|10177078|dbj|BAB10520.1| glutamate decarboxylase 1 (GAD 1) [Arabidopsis th [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Glutamate decarboxylase 1 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: GAD1, GAD | GAD (Glutamate decarboxylase 1); calmodulin binding | chr5:5711143-5714841 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At5g17330/MKP11_18 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Glutamate decarboxylase 1 (GAD 1) [nr-271106-contam.fasta]
  • AT5g17330/MKP11_18 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • GAD; calmodulin binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • glutamate decarboxylase 1 (GAD 1) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: GAD, GAD1 | glutamate decarboxylase | chr5:5711141-5714839 FORWARD LENGTH=502 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 502 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: response to cadmium ion [IEP]
    Molecular Function: calmodulin binding [IDA][IEP][TAS]
    glutamate decarboxylase activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL  60
   61 ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC VNMIAHLFNA PLEEAETAVG 120
  121 VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE 180
  181 VKLSEGYYVM DPQQAVDMVD ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP 240
  241 IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL 300
  301 IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK 360
  361 TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW IVPAYTMPPN AQHITVLRVV 420
  421 IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK 480
  481 QRDIITGWKK FVADRKKTSG IC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..502] PSI-BLAST 72.09691 Crystal structure of Escherichia coli GadB (low pH)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  2.29878871754893 bayes_pls_golite062009
  • transferase activity
    		•  1.44093490824786 bayes_pls_golite062009
  • glutamate decarboxylase activity
    		•  1.34215658716536 bayes_pls_golite062009
  • transferase activity, transferring nitrogenous groups
    		•  1.28316822767388 bayes_pls_golite062009
  • transaminase activity
    		•  1.24990480711889 bayes_pls_golite062009
  • glycine dehydrogenase (decarboxylating) activity
    		•  1.05524734914785 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor
    		•  1.05524734914785 bayes_pls_golite062009
  • binding
    		•  0.252160165096264 bayes_pls_golite062009
  • N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
    		•  0.223759435414525 bayes_pls_golite062009
  • pyridoxal phosphate binding
    		•  0.16957228630576 bayes_pls_golite062009
  • vitamin B6 binding
    		•  0.16957228630576 bayes_pls_golite062009
  • L-aspartate:2-oxoglutarate aminotransferase activity
    		•  0.13686553668007 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle