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Protein Overview: CYC2_ARATH

General Information:
Name(s) found: CYC2_ARATH [Swiss-Prot]
Description(s) found:
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  • pir||T04008 cytochrome c - Arabidopsis thaliana [NCBI NR]
  • gi|7267700|emb|CAB78127.1| cytochrome c [Arabidopsis thaliana] [NCBI NR]
  • gi|4539007|emb|CAB39628.1| cytochrome c [Arabidopsis thaliana] [NCBI NR]
  • gi|27734261|sp|Q9T0G2.1|CYC3_ARATH RecName: Full=Probable cytochrome c At4g10040 [NCBI NR]
  • gi|21592668|gb|AAM64617.1| cytochrome c [Arabidopsis thaliana] [NCBI NR]
  • gi|19310747|gb|AAL85104.1| putative cytochrome c protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15234910|ref|NP_192742.1| CYTC-2 (cytochrome c-2); electron carrier/ heme binding / iron ion binding [Arabidopsis thaliana] [NCBI NR]
  • gi|15028283|gb|AAK76618.1| putative cytochrome c protein [Arabidopsis thaliana] [NCBI NR]
  • Probable cytochrome c At4g10040 OS=Arabidopsis thaliana GN=At4g10040 PE=1 SV=1 [Swiss-Prot]
  • Cytochrome c-2 OS=Arabidopsis thaliana GN=CYTC-2 PE=1 SV=1 [Swiss-Prot]
  • (Q9T0G2) Probable cytochrome c At4g10040 [athaliana3702.FASTAC.txt]
  • cytochrome c [Arabidopsis thaliana]gi|19310747|gb|AAL85104.1| putative cytochrome c protein [Arabidopsis thaliana]gi|15028283|gb|AAK76618.1| putative cytochrome c protein [Arabidopsis thaliana]gi|4539007|emb|CAB39628.1| cytochrome c [Arabidopsis thalia [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Probable cytochrome c At4g10040 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: CYTC-2 | CYTC-2 (CYTOCHROME C-2); electron carrier | chr4:6277080-6278278 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative cytochrome c protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • cytochrome c [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • electron carrier/ electron transporter [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Probable cytochrome c At4g10040 [nr-271106-contam.fasta]
  • | Symbols: CYTC-2 | cytochrome c-2 | chr4:6277083-6278281 FORWARD LENGTH=112 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Probable cytochrome c At4g10040 OS=Arabidopsis thaliana GN=At4g10040 PE=3 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 112 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: NONE FOUND
    Molecular Function: copper ion binding [IDA]
    electron carrier activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASFDEAPPG NPKAGEKIFR TKCAQCHTVE KGAGHKQGPN LNGLFGRQSG TTPGYSYSAA  60
   61 NKSMAVNWEE KTLYDYLLNP KKYIPGTKMV FPGLKKPQDR ADLIAYLKEG TA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..112] PSI-BLAST 35.09691 STRUCTURE OF RICE FERRICYTOCHROME C AT 2.0 ANGSTROMS RESOLUTION

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor
    		•  7.77694826742571 bayes_pls_golite062009
  • ubiquinol-cytochrome-c reductase activity
    		•  7.77694826742571 bayes_pls_golite062009
  • electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity
    		•  5.3228546115966 bayes_pls_golite062009
  • electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity
    		•  4.97969104367667 bayes_pls_golite062009
  • hydrogen ion transmembrane transporter activity
    		•  4.83198573144889 bayes_pls_golite062009
  • oxidoreductase activity
    		•  4.80453374142732 bayes_pls_golite062009
  • monovalent inorganic cation transmembrane transporter activity
    		•  4.69221581420605 bayes_pls_golite062009
  • electron carrier activity
    		•  4.50051625202265 bayes_pls_golite062009
  • oxidoreductase activity, acting on diphenols and related substances as donors
    		•  4.39250939893637 bayes_pls_golite062009
  • inorganic cation transmembrane transporter activity
    		•  4.11195915185456 bayes_pls_golite062009
  • phosphoprotein phosphatase activity
    		•  3.07137767450073 bayes_pls_golite062009
  • protein serine/threonine phosphatase activity
    		•  3.05900853572871 bayes_pls_golite062009
  • oxidoreductase activity, acting on peroxide as acceptor
    		•  2.75675744166378 bayes_pls_golite062009
  • peroxidase activity
    		•  2.75675744166378 bayes_pls_golite062009
  • antioxidant activity
    		•  2.60087791856484 bayes_pls_golite062009
  • phosphatase activity
    		•  2.58257339159796 bayes_pls_golite062009
  • phosphoric ester hydrolase activity
    		•  2.48742191899955 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  1.67966224915812 bayes_pls_golite062009
  • binding
    		•  1.60003804759784 bayes_pls_golite062009
  • transporter activity
    		•  1.44083733311658 bayes_pls_golite062009
  • protein binding
    		•  1.33090393131805 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.28161778948702 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.15573917988688 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  1.01443199299167 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.881486298760893 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  0.783993292151034 bayes_pls_golite062009
  • hydrolase activity
    		•  0.624991704964657 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle