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Protein Overview: CALR1_ARATH

General Information:
Name(s) found: CALR1_ARATH [Swiss-Prot]
Description(s) found:
Found 21 descriptions.
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  • Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 425 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    mitochondrion [IDA]
    endoplasmic reticulum [IDA]
    plasma membrane [IDA]
    Biological Process: response to oxidative stress [IDA]
    response to salt stress [IEP]
    response to cadmium ion [IEP]
    Molecular Function: calcium ion binding [IEA][ISS]
    unfolded protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKLNPKFIS LILFALVVIV SAEVIFEEKF EDGWEKRWVK SDWKKDDNTA GEWKHTAGNW  60
   61 SGDANDKGIQ TSEDYRFYAI SAEFPEFSNK DKTLVFQFSV KHEQKLDCGG GYMKLLSDDV 120
  121 DQTKFGGDTP YSIMFGPDIC GYSTKKVHAI LTYNGTNHLI KKEVPCETDQ LTHVYTFVLR 180
  181 PDATYSILID NVEKQTGSLY SDWDLLPAKK IKDPSAKKPE DWDDKEYIPD PEDTKPAGYD 240
  241 DIPKEIPDTD AKKPEDWDDE EDGEWTAPTI PNPEYNGEWK PKKIKNPAYK GKWKAPMIDN 300
  301 PEFKDDPELY VFPKLKYVGV ELWQVKSGSL FDNVLVSDDP EYAKKLAEET WGKHKDAEKA 360
  361 AFDEAEKKRE EEESKDAPAE SDAEEEAEDD DNEGDDSDNE SKSEETKEAE ETKEAEETDA 420
  421 AHDEL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..425] PSI-BLAST 120.0 Calnexin

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • unfolded protein binding
    		•  2.94586353433162 bayes_pls_golite062009
  • binding
    		•  2.22628447073433 bayes_pls_golite062009
  • protein binding
    		•  0.877535125857832 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.138676484096114 bayes_pls_golite062009
  • chaperone binding
    		•  0.0327049405271921 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle