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Protein Overview: CPSF2_ARATH

General Information:
Name(s) found: CPSF2_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|28393921|gb|AAO42368.1| putative cleavage and polyadenylation specificity factor [Arabidopsis thaliana] [NCBI NR]
  • gi|18203240|sp|Q9LKF9.2|CPSF2_ARATH RecName: Full=Cleavage and polyadenylation specificity factor subunit 2; AltName: Full=Cleavage and polyadenylation specificity factor 100 kDa subunit; Short=CPSF 100 kDa subunit; AltName: Full=Protein EMBRYO DEFECTIVE [NCBI NR]
  • gi|15237845|ref|NP_197776.1| CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100); DNA binding / protein binding [Arabidopsis thaliana] [NCBI NR]
  • gi|14334618|gb|AAK59487.1| putative cleavage and polyadenylation specificity factor [Arabidopsis thaliana] [NCBI NR]
  • gi|10176855|dbj|BAB10061.1| cleavage and polyadenylation specificity factor [Arabidopsis thaliana] [NCBI NR]
  • Cleavage and polyadenylation specificity factor subunit 2 OS=Arabidopsis thaliana GN=CPSF100 PE=1 SV=2 [Swiss-Prot]
  • (Q9LKF9) Cleavage and polyadenylation specificity factor, 100 kDa subunit (CPSF 100 kDa subunit) [Swiss-Prot]
  • putative cleavage and polyadenylation specificity factor [Arabidopsis thaliana]gi|10176855|dbj|BAB10061.1| cleavage and polyadenylation specificity factor [Arabidopsis thaliana]gi|28393921|gb|AAO42368.1| putative cleavage and polyadenylation specificity [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Cleavage and polyadenylation specificity factor, 100 kDa subunit [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: EMB1265, CPSF100, ESP5, ATCPSF100 | ATCPSF100/CPSF100/EMB1265/ESP5 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR); DNA binding / protein binding | chr5:8052553-8058150 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • cleavage and polyadenylation specificity factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative cleavage and polyadenylation specificity factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Cleavage and polyadenylation specificity factor 100 kDa subunit (CPSF 100 kDa subunit) [nr-271106-contam.fasta]
  • CPSF100 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: EMB1265, CPSF100, ESP5, ATCPSF100 | cleavage and polyadenylation specificity factor 100 | chr5:8052550-8058147 FORWARD LENGTH=739 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 739 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    mRNA cleavage and polyadenylation specificity factor complex [ISS][NAS]
    Biological Process: posttranscriptional gene silencing by RNA [IMP]
    embryonic development ending in seed dormancy [NAS]
    mRNA polyadenylation [ISS]
    mRNA cleavage [ISS]
    Molecular Function: DNA binding [IPI]
    protein binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTSVQVTPL CGVYNENPLS YLVSIDGFNF LIDCGWNDLF DTSLLEPLSR VASTIDAVLL  60
   61 SHPDTLHIGA LPYAMKQLGL SAPVYATEPV HRLGLLTMYD QFLSRKQVSD FDLFTLDDID 120
  121 SAFQNVIRLT YSQNYHLSGK GEGIVIAPHV AGHMLGGSIW RITKDGEDVI YAVDYNHRKE 180
  181 RHLNGTVLQS FVRPAVLITD AYHALYTNQT ARQQRDKEFL DTISKHLEVG GNVLLPVDTA 240
  241 GRVLELLLIL EQHWSQRGFS FPIYFLTYVS SSTIDYVKSF LEWMSDSISK SFETSRDNAF 300
  301 LLRHVTLLIN KTDLDNAPPG PKVVLASMAS LEAGFAREIF VEWANDPRNL VLFTETGQFG 360
  361 TLARMLQSAP PPKFVKVTMS KRVPLAGEEL IAYEEEQNRL KREEALRASL VKEEETKASH 420
  421 GSDDNSSEPM IIDTKTTHDV IGSHGPAYKD ILIDGFVPPS SSVAPMFPYY DNTSEWDDFG 480
  481 EIINPDDYVI KDEDMDRGAM HNGGDVDGRL DEATASLMLD TRPSKVMSNE LIVTVSCSLV 540
  541 KMDYEGRSDG RSIKSMIAHV SPLKLVLVHA IAEATEHLKQ HCLNNICPHV YAPQIEETVD 600
  601 VTSDLCAYKV QLSEKLMSNV IFKKLGDSEV AWVDSEVGKT ERDMRSLLPM PGAASPHKPV 660
  661 LVGDLKIADF KQFLSSKGVQ VEFAGGGALR CGEYVTLRKV GPTGQKGGAS GPQQILIEGP 720
  721 LCEDYYKIRD YLYSQFYLL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..455] PSI-BLAST 79.0 No description for 2i7tA was found.
    2 View Details [456..640] FFAS03 3.32 No description for 2i7xA was found.
    3 View Details [641..739] deduced N/A Confident ab initio structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle