YRC Public Data Repository - Protein Structure Prediction

Protein:	CPSF2_ARATH
Organism:	Arabidopsis thaliana
Length:	739 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CPSF2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|9082326 - gi\|9082326\|gb\|AAF82809.1\|AF283277_1 polyadenylation cleavage/specificity factor 100 kDa subunit [Ara...	506.0	[0..1]	[739..1]
gi\|73962295 - gi\|73962295\|ref\|XP_856414.1\| PREDICTED: similar to cleavage and polyadenylation specific factor 2 is...	478.0	[0..1]	[739..1]
gi\|157822735, gi... - ref\|XP_216766.2\| similar to cleavage and polyadenylation specificity factor [Rattus norvegicus], gi\|...	473.0	[0..1]	[739..1]
CPSF2_MOUSE - Cleavage and polyadenylation specificity factor subunit 2 OS=Mus musculus GN=Cpsf2 PE=1 SV=1	472.0	[0..1]	[739..1]
CPSF2_BOVIN - Cleavage and polyadenylation specificity factor subunit 2 OS=Bos taurus GN=CPSF2 PE=1 SV=1	472.0	[0..1]	[739..1]
gi\|109084634 - gi\|109084634\|ref\|XP_001092942.1\| PREDICTED: similar to cleavage and polyadenylation specific factor ...	470.0	[0..1]	[739..1]
CPSF2 - cleavage and polyadenylation specific factor 2, 100kDa gi\|114654443, gi... - gi\|114654443\|ref\|XP_001147356.1\| PREDICTED: cleavage and polyadenylation specific factor 2 isoform 4...	470.0	[0..1]	[739..1]

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Predicted Domain #1

Region A:
Residues: [1-455]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTSVQVTPL CGVYNENPLS YLVSIDGFNF LIDCGWNDLF DTSLLEPLSR VASTIDAVLL  60
   61 SHPDTLHIGA LPYAMKQLGL SAPVYATEPV HRLGLLTMYD QFLSRKQVSD FDLFTLDDID 120
  121 SAFQNVIRLT YSQNYHLSGK GEGIVIAPHV AGHMLGGSIW RITKDGEDVI YAVDYNHRKE 180
  181 RHLNGTVLQS FVRPAVLITD AYHALYTNQT ARQQRDKEFL DTISKHLEVG GNVLLPVDTA 240
  241 GRVLELLLIL EQHWSQRGFS FPIYFLTYVS SSTIDYVKSF LEWMSDSISK SFETSRDNAF 300
  301 LLRHVTLLIN KTDLDNAPPG PKVVLASMAS LEAGFAREIF VEWANDPRNL VLFTETGQFG 360
  361 TLARMLQSAP PPKFVKVTMS KRVPLAGEEL IAYEEEQNRL KREEALRASL VKEEETKASH 420
  421 GSDDNSSEPM IIDTKTTHDV IGSHGPAYKD ILIDG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.0
Match:	2i7tA
Description:	No description for 2i7tA was found.

Predicted Domain #2

Region A:
Residues: [456-640]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FVPPSSSVAP MFPYYDNTSE WDDFGEIINP DDYVIKDEDM DRGAMHNGGD VDGRLDEATA  60
   61 SLMLDTRPSK VMSNELIVTV SCSLVKMDYE GRSDGRSIKS MIAHVSPLKL VLVHAIAEAT 120
  121 EHLKQHCLNN ICPHVYAPQI EETVDVTSDL CAYKVQLSEK LMSNVIFKKL GDSEVAWVDS 180
  181 EVGKT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.32
Match:	2i7xA
Description:	No description for 2i7xA was found.

Predicted Domain #3

Region A:
Residues: [641-739]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ERDMRSLLPM PGAASPHKPV LVGDLKIADF KQFLSSKGVQ VEFAGGGALR CGEYVTLRKV  60
   61 GPTGQKGGAS GPQQILIEGP LCEDYYKIRD YLYSQFYLL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.837	d.129.6	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits