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Protein Overview: COLX_ARATH

General Information:
Name(s) found: COLX_ARATH [Swiss-Prot]
Description(s) found:
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  • pir||C96705 probable zinc finger protein T22E19.18 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|17433041|sp|Q9C9F4.1|COLX_ARATH RecName: Full=Putative zinc finger protein At1g68190 [NCBI NR]
  • gi|15221299|ref|NP_176986.1| zinc finger (B-box type) family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|12325311|gb|AAG52592.1|AC016447_1 putative zinc finger protein; 84481-82861 [Arabidopsis thaliana] [NCBI NR]
  • Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana GN=At1g68190 PE=2 SV=1 [Swiss-Prot]
  • (Q9C9F4) Zinc finger protein constans-like 5 [athaliana3702.FASTAC.txt]
  • probable zinc finger protein T22E19.18 [imported] - Arabidopsis thalianagi|12325311|gb|AAG52592.1| putative zinc finger protein; 84481-82861 [Arabidopsis thaliana]gi|15221299|ref|NP_176986.1| zinc finger (B-box type) family protein [Arabidopsis thaliana [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Putative zinc finger protein At1g68190 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | zinc finger (B-box type) family protein | chr1:25563047-25564667 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Putative zinc finger protein At1g68190 [nr-271106-contam.fasta]
  • transcription factor/ zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative zinc finger protein; 84481-82861 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | B-box zinc finger family protein | chr1:25559384-25561004 FORWARD LENGTH=356 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 356 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    intracellular [IEA]
    Biological Process: regulation of transcription [TAS]
    Molecular Function: zinc ion binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCIIIIENM ERVCEFCKAY RAVVYCIADT ANLCLTCDAK VHSANSLSGR HLRTVLCDSC  60
   61 KNQPCVVRCF DHKMFLCHGC NDKFHGGGSS EHRRRDLRCY TGCPPAKDFA VMWGFRVMDD 120
  121 DDDVSLEQSF RMVKPKVQRE GGFILEQILE LEKVQLREEN GSSSLTERGD PSPLELPKKP 180
  181 EEQLIDLPQT GKELVVDFSH LSSSSTLGDS FWECKSPYNK NNQLWHQNIQ DIGVCEDTIC 240
  241 SDDDFQIPDI DLTFRNFEEQ FGADPEPIAD SNNVFFVSSL DKSHEMKTFS SSFNNPIFAP 300
  301 KPASSTISFS SSETDNPYSH SEEVISFCPS LSNNTRQKVI TRLKEKKRAR VEEKKA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..356] FFAS03 1.04 Cytochrome c nitrite reductase


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle