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View Structure Prediction Details

Protein: COLX_ARATH
Organism: Arabidopsis thaliana
Length: 356 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COLX_ARATH.

Description E-value Query
Range
Subject
Range
gi|26450669 - gi|26450669|dbj|BAC42445.1| putative zinc finger protein [Arabidopsis thaliana]
318.0 [0..1] [356..1]

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Predicted Domain #1
Region A:
Residues: [1-356]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCIIIIENM ERVCEFCKAY RAVVYCIADT ANLCLTCDAK VHSANSLSGR HLRTVLCDSC  60
   61 KNQPCVVRCF DHKMFLCHGC NDKFHGGGSS EHRRRDLRCY TGCPPAKDFA VMWGFRVMDD 120
  121 DDDVSLEQSF RMVKPKVQRE GGFILEQILE LEKVQLREEN GSSSLTERGD PSPLELPKKP 180
  181 EEQLIDLPQT GKELVVDFSH LSSSSTLGDS FWECKSPYNK NNQLWHQNIQ DIGVCEDTIC 240
  241 SDDDFQIPDI DLTFRNFEEQ FGADPEPIAD SNNVFFVSSL DKSHEMKTFS SSFNNPIFAP 300
  301 KPASSTISFS SSETDNPYSH SEEVISFCPS LSNNTRQKVI TRLKEKKRAR VEEKKA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.04
Match: 1oahA
Description: Cytochrome c nitrite reductase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle