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Protein Overview: CLCF_ARATH

General Information:
Name(s) found: CLCF_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|41688504|sp|Q8RXR2.2|CLCF_ARATH RecName: Full=Chloride channel protein CLC-f; Short=AtCLC-f [NCBI NR]
  • gi|18405453|ref|NP_564698.1| CLC-F (CHLORIDE CHANNEL F); ion channel/ voltage-gated chloride channel [Arabidopsis thaliana] [NCBI NR]
  • gi|14039802|gb|AAK53391.1|AF366368_1 CLC-f chloride channel protein [Arabidopsis thaliana] [NCBI NR]
  • gi|13619402|emb|CAC36386.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • Chloride channel protein CLC-f OS=Arabidopsis thaliana GN=CLC-F PE=2 SV=2 [Swiss-Prot]
  • (Q8RXR2) Chloride channel protein CLC-f (AtCLC-f) [athaliana3702.FASTAC.txt]
  • hypothetical protein [Arabidopsis thaliana]gi|41688504|sp|Q8RXR2|CLCF_ARATH Chloride channel protein CLC-f (AtCLC-f)gi|14039802|gb|AAK53391.1| CLC-f chloride channel protein [Arabidopsis thaliana]gi|18405453|ref|NP_564698.1| voltage-gated chloride chan [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Splice Isoform 1 of Chloride channel protein CLC-f [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATCLC-F, CLC-F | CLC-F (CHLORIDE CHANNEL F); voltage-gated chloride channel | chr1:20791004-20794656 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Chloride channel protein CLC-f (AtCLC-f) [nr-271106-contam.fasta]
  • CLC-f chloride channel protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • CLC-F (CHLORIDE CHANNEL F); voltage-gated chloride channel [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: CLC-F, ATCLC-F | chloride channel F | chr1:20787338-20790990 REVERSE LENGTH=781 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 781 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    membrane [ISS]
    Golgi apparatus [IDA]
    Biological Process: chloride transport [IEA][ISS]
    Molecular Function: ion channel activity [IEA]
    voltage-gated chloride channel activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGGAGEYN EDRHLLRSTD GDEVGIGGGE GDLDVESQSP AIRSGAGGVR DLFKHIDRRF  60
   61 SLSGRRLSFK RMENIRVDRE RHNPSSSSAF SAAGEEDGGG ISNLHSVDDR NDEYGFDEEV 120
  121 LGDSAPPEWA LLLIGCLIGV AAGICVAGFN KGVHVIHEWA WAGTPNEGAA WLRLQRLADT 180
  181 WHRILLIPVT GGVIVGMMHG LLEILDQIRQ SNSSQRQGLD FLAGIYPVIK AIQAAVTLGT 240
  241 GCSLGPEGPS VDIGKSCANG FALMMENNRE RRIALTAAGA ASGIASGFNA AVAGCFFAIE 300
  301 TVLRPLRAEN SPPFTTAMII LASVISSTVS NALLGTQSAF TVPSYDLKSA AELPLYLILG 360
  361 MLCGAVSVVF SRLVTWFTKS FDFIKDKFGL PAIVCPALGG LGAGIIALKY PGILYWGFTN 420
  421 VEEILHTGKS ASAPGIWLLA QLAAAKVVAT ALCKGSGLVG GLYAPSLMIG AAVGAVFGGS 480
  481 AAEIINRAIP GNAAVAQPQA YALVGMAATL ASMCSVPLTS VLLLFELTKD YRILLPLMGA 540
  541 VGLAIWVPSV ANQGKESDSS EGRSTGRGYS SLSPSERKTE GVWRHTDNAD SLELTVIENP 600
  601 DHNSFLDEET ILEDLKVMRV MSKNYVKVSS GTTLREARNI LKESHQNCIM VVDDDDFLAG 660
  661 ILTHGDIRRY LSNNASTILD ENTCPVSSVC TKKISYRGQE RGLLTCYPDA TVGVAKELME 720
  721 ARGVKQLPVV KRGEVIHKGK RRKLLGLLHY DSIWTFLRDE MSRRRSINDR RKDKEVGTNG 780
  781 H

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..126] deduced N/A No confident structure predictions are available.
    2 View Details [127..564] PSI-BLAST 59.522879 Clc chloride channel
    3 View Details [565..781] PSI-BLAST 31.522879 Crystal structure of Inosine-5'-monophosphate dehydrogenase (TM1347) from THERMOTOGA MARITIMA at 2.18 A resolution


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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