YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLCF_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	128	0.86
Transmembrane Helix	129	151	0.89
Non-Cytoplasmic	152	180	0.77
Transmembrane Helix	181	202	0.91
Cytoplasmic	203	221	0.70
Transmembrane Helix	222	241	0.69
Non-Cytoplasmic	242	273	0.89
Transmembrane Helix	274	299	0.81
Cytoplasmic	300	313	0.80
Transmembrane Helix	314	335	0.90
Non-Cytoplasmic	336	354	0.84
Transmembrane Helix	355	376	0.93
Cytoplasmic	377	387	0.92
Transmembrane Helix	388	408	0.94
Non-Cytoplasmic	409	432	0.80
Transmembrane Helix	433	450	0.86
Cytoplasmic	451	460	0.63
Transmembrane Helix	461	482	0.89
Non-Cytoplasmic	483	500	0.85
Transmembrane Helix	501	524	0.91
Cytoplasmic	525	532	0.80
Transmembrane Helix	533	551	0.93
Non-Cytoplasmic	552	781	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGGAGEYN EDRHLLRSTD GDEVGIGGGE GDLDVESQSP AIRSGAGGVR DLFKHIDRRF  60
   61 SLSGRRLSFK RMENIRVDRE RHNPSSSSAF SAAGEEDGGG ISNLHSVDDR NDEYGFDEEV 120
  121 LGDSAPPEWA LLLIGCLIGV AAGICVAGFN KGVHVIHEWA WAGTPNEGAA WLRLQRLADT 180
  181 WHRILLIPVT GGVIVGMMHG LLEILDQIRQ SNSSQRQGLD FLAGIYPVIK AIQAAVTLGT 240
  241 GCSLGPEGPS VDIGKSCANG FALMMENNRE RRIALTAAGA ASGIASGFNA AVAGCFFAIE 300
  301 TVLRPLRAEN SPPFTTAMII LASVISSTVS NALLGTQSAF TVPSYDLKSA AELPLYLILG 360
  361 MLCGAVSVVF SRLVTWFTKS FDFIKDKFGL PAIVCPALGG LGAGIIALKY PGILYWGFTN 420
  421 VEEILHTGKS ASAPGIWLLA QLAAAKVVAT ALCKGSGLVG GLYAPSLMIG AAVGAVFGGS 480
  481 AAEIINRAIP GNAAVAQPQA YALVGMAATL ASMCSVPLTS VLLLFELTKD YRILLPLMGA 540
  541 VGLAIWVPSV ANQGKESDSS EGRSTGRGYS SLSPSERKTE GVWRHTDNAD SLELTVIENP 600
  601 DHNSFLDEET ILEDLKVMRV MSKNYVKVSS GTTLREARNI LKESHQNCIM VVDDDDFLAG 660
  661 ILTHGDIRRY LSNNASTILD ENTCPVSSVC TKKISYRGQE RGLLTCYPDA TVGVAKELME 720
  721 ARGVKQLPVV KRGEVIHKGK RRKLLGLLHY DSIWTFLRDE MSRRRSINDR RKDKEVGTNG 780
  781 H