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Protein Overview: CAP6_ARATH

General Information:
Name(s) found: CAP6_ARATH [Swiss-Prot]
Description(s) found:
Found 14 descriptions.
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  • Putative clathrin assembly protein At4g25940 OS=Arabidopsis thaliana GN=At4g25940 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 601 amino acids

    Gene Ontology:
    Cellular Component: clathrin coat [IEA]
    Biological Process: clathrin coat assembly [IEA]
    Molecular Function: clathrin binding [IEA]
    phospholipid binding [IEA]
    binding [ISS]
    phosphatidylinositol binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATFNSFRKA VGAIKDSTTV SIAKVNSEFK DLDVAIVKAT NHVESAPKER HIRRIFSATS  60
   61 VVQPRADVAY CIHALAKRLS KTRNWVVAIK VLIVIHRTLR EGDPTFREEL LNYSHRGHIL 120
  121 RISNFKDDTS PLAWDCSAWI RTYALFLEER LECYRVLKYD IEAERLPKGS GASSKNVDFN 180
  181 ASQTYRTRML SDEELLEQLP ALQQLLYRLI GCQPEGSAYS NYLIQYALAL VLKESFKIYC 240
  241 AINDGIINLV DMFFEMSRHD AVKALNIYKR AGQQAENLAD FYEYCKGLEL ARNFQFPTLR 300
  301 QPPPSFLATM EDYIKEAPQS GSVQKKLEYQ EKEEEEQEEE EAEHSVQPEE PAEADNQKEN 360
  361 SEGDQPLIEE EEEDQEKIEE EDAKPSFLID TDDLLGLNEI NPKAAEIEDR NALALAIYPP 420
  421 GHEAPGPSNI LSLIETGGSG WELALVTPQN NNNNNNPRPA PNTKLAGGFD NLLLDSLYED 480
  481 DSARRQIQLT NAGYGHGGID TTAAPPNPFQ MQQDPFAMSN NIAPPTNVQM AMQQQQQQQM 540
  541 TMMHQSPYNY THPHDYHQNH HHHQFSAGPS PSNPFGDAFL ALPPPPGSAG PQQNNHHHML 600
  601 L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..326] PSI-BLAST 88.30103 Clathrin assembly lymphoid myeloid leukaemia protein, Calm
    2 View Details [327..425] deduced N/A No confident structure predictions are available.
    3 View Details [426..601] PSI-BLAST 6.522879 Sec24

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.229007340928547 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle