| Protein: | CAP6_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 601 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAP6_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
428.0 | [0..1] | [601..1] |
|
Region A: Residues: [1-326] |
1 11 21 31 41 51
| | | | | |
1 MATFNSFRKA VGAIKDSTTV SIAKVNSEFK DLDVAIVKAT NHVESAPKER HIRRIFSATS 60
61 VVQPRADVAY CIHALAKRLS KTRNWVVAIK VLIVIHRTLR EGDPTFREEL LNYSHRGHIL 120
121 RISNFKDDTS PLAWDCSAWI RTYALFLEER LECYRVLKYD IEAERLPKGS GASSKNVDFN 180
181 ASQTYRTRML SDEELLEQLP ALQQLLYRLI GCQPEGSAYS NYLIQYALAL VLKESFKIYC 240
241 AINDGIINLV DMFFEMSRHD AVKALNIYKR AGQQAENLAD FYEYCKGLEL ARNFQFPTLR 300
301 QPPPSFLATM EDYIKEAPQS GSVQKK
|
| Detection Method: |  |
| Confidence: | 88.30103 |
| Match: | 1hf8A |
| Description: | Clathrin assembly lymphoid myeloid leukaemia protein, Calm |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.229007340928547 | bayes_pls_golite062009 |
|
Region A: Residues: [327-425] |
1 11 21 31 41 51
| | | | | |
1 LEYQEKEEEE QEEEEAEHSV QPEEPAEADN QKENSEGDQP LIEEEEEDQE KIEEEDAKPS 60
61 FLIDTDDLLG LNEINPKAAE IEDRNALALA IYPPGHEAP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [426-601] |
1 11 21 31 41 51
| | | | | |
1 GPSNILSLIE TGGSGWELAL VTPQNNNNNN NPRPAPNTKL AGGFDNLLLD SLYEDDSARR 60
61 QIQLTNAGYG HGGIDTTAAP PNPFQMQQDP FAMSNNIAPP TNVQMAMQQQ QQQQMTMMHQ 120
121 SPYNYTHPHD YHQNHHHHQF SAGPSPSNPF GDAFLALPPP PGSAGPQQNN HHHMLL
|
| Detection Method: | |
| Confidence: | 6.522879 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
