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Protein Overview: ARP_ARATH

General Information:
Name(s) found: ARP_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|8488963|sp|P45951.2|ARP_ARATH RecName: Full=Apurinic endonuclease-redox protein; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase [NCBI NR]
  • pir||T02441 DNA-(apurinic or apyrimidinic site) lyase (ARP) [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|3241944|gb|AAC23731.1| DNA-(apurinic or apyrimidinic site) lyase (ARP) [Arabidopsis thaliana] [NCBI NR]
  • gi|15227354|ref|NP_181677.1| ARP; DNA-(apurinic or apyrimidinic site) lyase [Arabidopsis thaliana] [NCBI NR]
  • DNA-(apurinic or apyrimidinic site) lyase, chloroplastic OS=Arabidopsis thaliana GN=ARP PE=1 SV=2 [Swiss-Prot]
  • (P45951) Apurinic endonuclease-redox protein (DNA-(apurinic or apyrimidinic site) lyase) (EC 4.2.99.18) [athaliana3702.FASTAC.txt]
  • DNA-(apurinic or apyrimidinic site) lyase (ARP) [Arabidopsis thaliana]gi|8488963|sp|P45951|ARP_ARATH Apurinic endonuclease-redox protein (DNA-(apurinic or apyrimidinic site) lyase)gi|7487449|pir||T02441 DNA-(apurinic or apyrimidinic site) lyase (ARP) [i [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Apurinic endonuclease-redox protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ARP | ARP (apurinic endonuclease-redox protein) | chr2:17292809-17295847 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • DNA-(apurinic or apyrimidinic site) lyase (ARP) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Apurinic endonuclease-redox protein (DNA-(apurinic or apyrimidinic site) lyase) [nr-271106-contam.fasta]
  • ARP [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ARP | apurinic endonuclease-redox protein | chr2:17285731-17288769 FORWARD LENGTH=536 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Apurinic endonuclease-redox protein OS=Arabidopsis thaliana GN=ARP PE=2 SV=2 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 536 amino acids

    Gene Ontology:
    Cellular Component: chloroplast nucleoid [IDA]
    Biological Process: positive regulation of transcription [TAS]
    Molecular Function: DNA-(apurinic or apyrimidinic site) lyase activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNVLQFGLQ SSAIYVAKFL VVPLRSLRVG SSFVGVGVGT RSFNKRLMSN ATAFSINNSK  60
   61 RKELKIPGAA IDQNCHQMGS DTDRDEMGTL QDDRKEIEAM TVQELRSTLR KLGVPVKGRK 120
  121 QELISTLRLH MDSNLPDQKE TSSSTRSDSV TIKRKISNRE EPTEDECTNS EAYDIEHGEK 180
  181 RVKQSTEKNL KAKVSAKAIA KEQKSLMRTG KQQIQSKEET SSTISSELLK TEEIISSPSQ 240
  241 SEPWTVLAHK KPQKDWKAYN PKTMRPPPLP EGTKCVKVMT WNVNGLRGLL KFESFSALQL 300
  301 AQRENFDILC LQETKLQVKD VEEIKKTLID GYDHSFWSCS VSKLGYSGTA IISRIKPLSV 360
  361 RYGTGLSGHD TEGRIVTAEF DSFYLINTYV PNSGDGLKRL SYRIEEWDRT LSNHIKELEK 420
  421 SKPVVLTGDL NCAHEEIDIF NPAGNKRSAG FTIEERQSFG ANLLDKGFVD TFRKQHPGVV 480
  481 GYTYWGYRHG GRKTNKGWRL DYFLVSQSIA ANVHDSYILP DINGSDHCPI GLILKL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..199] MSA 11.176996 View MSA. No confident structure predictions are available.
    2 View Details [200..536] PSI-BLAST 81.39794 DNA repair endonuclease Hap1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • exonuclease activity
    		•  2.70644978530491 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  2.57658637220545 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  2.54419310609558 bayes_pls_golite062009
  • hydrolase activity
    		•  2.50832753420463 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  2.36841783202726 bayes_pls_golite062009
  • exodeoxyribonuclease activity
    		•  1.8139951607534 bayes_pls_golite062009
  • exodeoxyribonuclease activity, producing 5'-phosphomonoesters
    		•  1.7967853371745 bayes_pls_golite062009
  • nuclease activity
    		•  1.78432551160775 bayes_pls_golite062009
  • catalytic activity
    		•  1.76511376991978 bayes_pls_golite062009
  • binding
    		•  1.74593496417303 bayes_pls_golite062009
  • DNA binding
    		•  0.961734136090079 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.947430734766989 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.597390739522692 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.58571720340663 bayes_pls_golite062009
  • protein binding
    		•  0.476649214025345 bayes_pls_golite062009
  • inositol or phosphatidylinositol phosphatase activity
    		•  0.228910502815798 bayes_pls_golite062009
  • phosphoric ester hydrolase activity
    		•  0.100365481550461 bayes_pls_golite062009
  • phosphatase activity
    		•  0.00559251346312178 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle