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Protein Overview: AEEP_BACSU

General Information:
Name(s) found: AEEP_BACSU [Swiss-Prot]
Description(s) found:
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  • pir||H69855 chloromuconate cycloisomerase homolog ykfB - Bacillus subtilis [NCBI NR]
  • gi|52695821|pdb|1TKK|H Chain H, The Structure Of A Substrate-Liganded Complex Of The L-Ala- DL-Glu Epimerase From Bacillus Subtilis [NCBI NR]
  • gi|52695820|pdb|1TKK|G Chain G, The Structure Of A Substrate-Liganded Complex Of The L-Ala- DL-Glu Epimerase From Bacillus Subtilis [NCBI NR]
  • gi|52695819|pdb|1TKK|F Chain F, The Structure Of A Substrate-Liganded Complex Of The L-Ala- DL-Glu Epimerase From Bacillus Subtilis [NCBI NR]
  • gi|52695818|pdb|1TKK|E Chain E, The Structure Of A Substrate-Liganded Complex Of The L-Ala- DL-Glu Epimerase From Bacillus Subtilis [NCBI NR]
  • gi|52695817|pdb|1TKK|D Chain D, The Structure Of A Substrate-Liganded Complex Of The L-Ala- DL-Glu Epimerase From Bacillus Subtilis [NCBI NR]
  • gi|52695816|pdb|1TKK|C Chain C, The Structure Of A Substrate-Liganded Complex Of The L-Ala- DL-Glu Epimerase From Bacillus Subtilis [NCBI NR]
  • gi|52695815|pdb|1TKK|B Chain B, The Structure Of A Substrate-Liganded Complex Of The L-Ala- DL-Glu Epimerase From Bacillus Subtilis [NCBI NR]
  • gi|52695814|pdb|1TKK|A Chain A, The Structure Of A Substrate-Liganded Complex Of The L-Ala- DL-Glu Epimerase From Bacillus Subtilis [NCBI NR]
  • gi|2632019|emb|CAA05578.1| YkfB [Bacillus subtilis] [NCBI NR]
  • gi|18158853|pdb|1JPM|D Chain D, L-Ala-DL-Glu Epimerase [NCBI NR]
  • gi|18158852|pdb|1JPM|C Chain C, L-Ala-DL-Glu Epimerase [NCBI NR]
  • gi|18158851|pdb|1JPM|B Chain B, L-Ala-DL-Glu Epimerase [NCBI NR]
  • gi|18158850|pdb|1JPM|A Chain A, L-Ala-DL-Glu Epimerase [NCBI NR]
  • L-Ala-D/L-Glu epimerase OS=Bacillus subtilis GN=ykfB PE=1 SV=1 [Swiss-Prot]
  • 366 aa - unknown; similar to chloromuconate cycloisomerase [subtilist_Price.fasta]
  • hypothetical protein BSU12980 [Bacillus subtilis subsp. subtilis str. 168]gi|2632019|emb|CAA05578.1| YkfB [Bacillus subtilis]gi|2633652|emb|CAB13155.1| ykfB [Bacillus subtilis subsp. subtilis str. 168]gi|52695821|pdb|1TKK|H Chain H, The Structure Of A [nrdb_11152004_Chlamydomonas]
  • Chain D, L-Ala-DL-Glu Epimerase [nr-271106-contam.fasta]
  • Chain B, L-Ala-DL-Glu Epimerase [nr-271106-contam.fasta]
  • Chain G, The Structure Of A Substrate-Liganded Complex Of The L-Ala- DL-Glu Epimerase From Bacillus Subtilis [nr-271106-contam.fasta]
  • Chain C, L-Ala-DL-Glu Epimerase [nr-271106-contam.fasta]
  • Chain H, The Structure Of A Substrate-Liganded Complex Of The L-Ala- DL-Glu Epimerase From Bacillus Subtilis [nr-271106-contam.fasta]
  • Chain B, The Structure Of A Substrate-Liganded Complex Of The L-Ala- DL-Glu Epimerase From Bacillus Subtilis [nr-271106-contam.fasta]
  • Chain C, The Structure Of A Substrate-Liganded Complex Of The L-Ala- DL-Glu Epimerase From Bacillus Subtilis [nr-271106-contam.fasta]
  • Chain D, The Structure Of A Substrate-Liganded Complex Of The L-Ala- DL-Glu Epimerase From Bacillus Subtilis [nr-271106-contam.fasta]
  • Chain A, L-Ala-DL-Glu Epimerase [nr-271106-contam.fasta]
  • Chain F, The Structure Of A Substrate-Liganded Complex Of The L-Ala- DL-Glu Epimerase From Bacillus Subtilis [nr-271106-contam.fasta]
  • Chain A, The Structure Of A Substrate-Liganded Complex Of The L-Ala- DL-Glu Epimerase From Bacillus Subtilis [nr-271106-contam.fasta]
  • Chain E, The Structure Of A Substrate-Liganded Complex Of The L-Ala- DL-Glu Epimerase From Bacillus Subtilis [nr-271106-contam.fasta]
  • L-Ala-D/L-Glu epimerase OS=Bacillus subtilis (strain 168) GN=ykfB PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Bacillus subtilis
    Length: 366 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIIRIETSR IAVPLTKPFK TALRTVYTAE SVIVRITYDS GAVGWGEAPP TLVITGDSMD  60
   61 SIESAIHHVL KPALLGKSLA GYEAILHDIQ HLLTGNMSAK AAVEMALYDG WAQMCGLPLY 120
  121 QMLGGYRDTL ETDYTVSVNS PEEMAADAEN YLKQGFQTLK IKVGKDDIAT DIARIQEIRK 180
  181 RVGSAVKLRL DANQGWRPKE AVTAIRKMED AGLGIELVEQ PVHKDDLAGL KKVTDATDTP 240
  241 IMADESVFTP RQAFEVLQTR SADLINIKLM KAGGISGAEK INAMAEACGV ECMVGSMIET 300
  301 KLGITAAAHF AASKRNITRF DFDAPLMLKT DVFNGGITYS GSTISMPGKP GLGIIGAALL 360
  361 KGEKEQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..366] PSI-BLAST 88.39794 L-Ala-D/L-Glu epimerase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • phosphopyruvate hydratase activity
    		•  3.65145751665944 bayes_pls_golite062009
  • catalytic activity
    		•  2.92832446329541 bayes_pls_golite062009
  • lyase activity
    		•  1.61745438895474 bayes_pls_golite062009
  • carbon-oxygen lyase activity
    		•  1.51302044976924 bayes_pls_golite062009
  • hydro-lyase activity
    		•  1.43371609516163 bayes_pls_golite062009
  • isomerase activity
    		•  0.8538677780966 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle