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Protein Overview: alp-1

General Information:
Name(s) found: alp-1 / CE35946 [WormBase]
Description(s) found:
Found 18 descriptions.
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  • WBGene00001132 locus:alp-1 status:Confirmed UniProt:G5EEF6 protein_id:CAE52902.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 771 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: pharyngeal pumping [IMPLink to PubMed article]
    locomotory behavior [IMPLink to PubMed article]
    determination of adult lifespan [IMPLink to PubMed article]
    Molecular Function: zinc ion binding [IEALink to PubMed article]
    protein binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRITTTPRP WQPSGAATRI WRPEVTENTG PGQDQTPYRV NLQHSSDTRP PQGFNNSALP  60
   61 FETDQRVKHM QYNSPLGIYS DKSAAEQYVQ QTQGLGDNSG ARAAAQRQDE PAYLRSETLR 120
  121 LLKEQEHGSA GGAGTTLSNH PNPSGLPVCF MCTRPILGVM ARAAGKNLHG DCLSCATCGN 180
  181 SLRNVGHHFI EDKFYCDIHG TQRKHGGRPG MDPNIFVKSS PTAAQPVHIQ DSPRAAYHPQ 240
  241 VNTARPVSVS PAPSAGSKTV TTHYHTPKTQ GILSPGQRGV PTAAFGADLS KSVTYGGGVG 300
  301 PGGTHYDSNR LSPAPSQYST QSRNQSQQHY QQHVVQAPPP VPSNPPPSNG LREMEDDDRV 360
  361 RAIECIARHQ SELEQTQTQL STLLESAIVY LQNLRPELEL TEPIDNDAKS LETVKFEPTR 420
  421 AEQRVNEIRK KVLEDLEHLP ILGDGMDSVP PPPPERKVFP FQSYQPIAPQ FPVPAAESPV 480
  481 TQSLHDVLDE FYSLRKPTPT QNVAQSSDTT AEDSRNFLAS RLGQVMIDEN KKAGGSNGSS 540
  541 QHHNQQGSSY TKTSFERTTT ETRPQQNTGA PRAGDFRGTG HLTTTTTTQQ NGGRAPFCES 600
  601 CKQQIRGAFV LATGKSWCPE HFVCANSSCR RRLLECGFVE EDGQKFCESC FEQHIAPRCN 660
  661 KCSKPIISDC LNALQKKWHP TCFTCAHCQK PFGNSAFYLE QGLPYCEQDW NALFTTKCVS 720
  721 CRYPIEAGDR WVEALGNAFH SNCFTCARCN HNLEGESFFA KNGQPFCRLH A

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..97] deduced N/A No confident structure predictions are available.
    2 View Details [98..253] PSI-BLAST 4.0 No description for 2darA was found.
    3 View Details [254..387] deduced N/A No confident structure predictions are available.
    4 View Details [388..679] PSI-BLAST 43.39794 No description for 2i13A was found.
    5 View Details [680..771] PSI-BLAST 17.154902 Designed zinc finger protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  2.12572817427544 bayes_pls_golite062009
  • protein binding
    		•  1.29473277650963 bayes_pls_golite062009
  • receptor activity
    		•  1.14136291123774 bayes_pls_golite062009
  • transporter activity
    		•  0.883869495141753 bayes_pls_golite062009
  • signal transducer activity
    		•  0.805976257280115 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.805976257280115 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.69816175939074 bayes_pls_golite062009
  • DNA binding
    		•  0.553317759726036 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.480921069521595 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.421612378286018 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.248246733554633 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle