| Protein: | alp-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 771 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for alp-1.
| Description | E-value | Query Range |
Subject Range |
|
|
684.0 | [0..102] | [770..341] |
|
Region A: Residues: [1-97] |
1 11 21 31 41 51
| | | | | |
1 MVRITTTPRP WQPSGAATRI WRPEVTENTG PGQDQTPYRV NLQHSSDTRP PQGFNNSALP 60
61 FETDQRVKHM QYNSPLGIYS DKSAAEQYVQ QTQGLGD
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [98-253] |
1 11 21 31 41 51
| | | | | |
1 NSGARAAAQR QDEPAYLRSE TLRLLKEQEH GSAGGAGTTL SNHPNPSGLP VCFMCTRPIL 60
61 GVMARAAGKN LHGDCLSCAT CGNSLRNVGH HFIEDKFYCD IHGTQRKHGG RPGMDPNIFV 120
121 KSSPTAAQPV HIQDSPRAAY HPQVNTARPV SVSPAP
|
| Detection Method: | |
| Confidence: | 4.0 |
| Match: | 2darA |
| Description: | No description for 2darA was found. |
| Term | Confidence | Notes |
| binding | 2.12572817427544 | bayes_pls_golite062009 |
| protein binding | 1.29473277650963 | bayes_pls_golite062009 |
| receptor activity | 1.14136291123774 | bayes_pls_golite062009 |
| transporter activity | 0.883869495141753 | bayes_pls_golite062009 |
| signal transducer activity | 0.805976257280115 | bayes_pls_golite062009 |
| molecular transducer activity | 0.805976257280115 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.69816175939074 | bayes_pls_golite062009 |
| DNA binding | 0.553317759726036 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.480921069521595 | bayes_pls_golite062009 |
| nucleic acid binding | 0.421612378286018 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.248246733554633 | bayes_pls_golite062009 |
|
Region A: Residues: [254-387] |
1 11 21 31 41 51
| | | | | |
1 SAGSKTVTTH YHTPKTQGIL SPGQRGVPTA AFGADLSKSV TYGGGVGPGG THYDSNRLSP 60
61 APSQYSTQSR NQSQQHYQQH VVQAPPPVPS NPPPSNGLRE MEDDDRVRAI ECIARHQSEL 120
121 EQTQTQLSTL LESA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [388-679] |
1 11 21 31 41 51
| | | | | |
1 IVYLQNLRPE LELTEPIDND AKSLETVKFE PTRAEQRVNE IRKKVLEDLE HLPILGDGMD 60
61 SVPPPPPERK VFPFQSYQPI APQFPVPAAE SPVTQSLHDV LDEFYSLRKP TPTQNVAQSS 120
121 DTTAEDSRNF LASRLGQVMI DENKKAGGSN GSSQHHNQQG SSYTKTSFER TTTETRPQQN 180
181 TGAPRAGDFR GTGHLTTTTT TQQNGGRAPF CESCKQQIRG AFVLATGKSW CPEHFVCANS 240
241 SCRRRLLECG FVEEDGQKFC ESCFEQHIAP RCNKCSKPII SDCLNALQKK WH
|
| Detection Method: | |
| Confidence: | 43.39794 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
|
Region A: Residues: [680-771] |
1 11 21 31 41 51
| | | | | |
1 PTCFTCAHCQ KPFGNSAFYL EQGLPYCEQD WNALFTTKCV SCRYPIEAGD RWVEALGNAF 60
61 HSNCFTCARC NHNLEGESFF AKNGQPFCRL HA
|
| Detection Method: | |
| Confidence: | 17.154902 |
| Match: | 1meyC |
| Description: | Designed zinc finger protein |
Matching Structure (courtesy of the PDB): |
|
