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Protein Overview: ctb-1

General Information:
Name(s) found: ctb-1 / CE35348 [WormBase]
Description(s) found:
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  • WBGene00000829 locus:ctb-1 Cytochrome b status:Partially_confirmed [WormBase]
  • gi|5834888|ref|NP_006958.1|CYTB_10021 cytochrome b [Caenorhabditis elegans] [NCBI NR]
  • gi|559501|emb|CAA38156.1| unnamed protein product [Caenorhabditis elegans] [NCBI NR]
  • gi|27543316|gb|AAO16456.1| cytochrome b [Caenorhabditis elegans] [NCBI NR]
  • gi|27543310|gb|AAO16452.1| cytochrome b [Caenorhabditis elegans] [NCBI NR]
  • gi|27543307|gb|AAO16450.1| cytochrome b [Caenorhabditis elegans] [NCBI NR]
  • gi|27543295|gb|AAO16442.1| cytochrome b [Caenorhabditis elegans] [NCBI NR]
  • gi|27543289|gb|AAO16438.1| cytochrome b [Caenorhabditis elegans] [NCBI NR]
  • gi|170027357|gb|ACB06381.1| cytochrome b [Caenorhabditis elegans] [NCBI NR]
  • gi|1345905|sp|P24890.2|CYB_CAEEL RecName: Full=Cytochrome b; AltName: Full=Ubiquinol-cytochrome-c reductase complex cytochrome b subunit; AltName: Full=Cytochrome b-c1 complex subunit 3; AltName: Full=Complex III subunit 3; AltName: Full=Complex III subun [NCBI NR]
  • pir||S26031 ubiquinol-cytochrome-c reductase (EC 1.10.2.2) cytochrome b - Caenorhabditis elegans mitochondrion [NCBI NR]
  • Cytochrome b OS=Caenorhabditis elegans GN=ctb-1 PE=3 SV=2 [Swiss-Prot]
  • [wormpep111.fasta]
  • CE35348 WBGene00000829 locus:ctb-1 cytochrome b status:Partially_confirmed protein_id:CAA38156.1. [wormpep150.fasta]
  • cytochrome b [Caenorhabditis elegans]gi|559501|emb|CAA38156.1| unnamed protein product [Caenorhabditis elegans]gi|27543316|gb|AAO16456.1| cytochrome b [Caenorhabditis elegans]gi|27543310|gb|AAO16452.1| cytochrome b [Caenorhabditis elegans]gi|27543307| [nrdb_11152004_Chlamydomonas]
  • 35348 WBGene00000829 locus:ctb-1 cytochrome b status:Predicted [wormpep130-phg-ecoli-orf-rand.fasta]
  • CE35348 WBGene00000829 locus:ctb-1 cytochrome b status:Predicted [wormpep132.fasta]
  • 35348 WBGene00000829 locus:ctb-1 cytochrome b status:Partially_confirmed protein_id:CAA38156.1. [wormpep150-phg-orf-ecoli-rand.fasta]
  • locus:ctb-1 cytochrome b status:Partially_confirmed SW:P24890 protein_id:CAA38156.1 [wormpep115.fasta.reversed]
  • CE35348 WBGene00000829 locus:ctb-1 cytochrome b status:Partially_confirmed [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE35348 WBGene00000829 locus:ctb-1 cytochrome b status:Partially_confirmed| [wormORF-contam.fasta]
  • CE35348 WBGene00000829 locus:ctb-1 cytochrome b status:Partially_confirmed [wormpep160-contam.fasta]
  • Cytochrome b [nr-271106-contam.fasta]
  • cytochrome b [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • unnamed protein product [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE35348 WBGene00000829 locus:ctb-1 status:Partially_confirmed UniProt:P24890 Cytochrome b [wormpep246-ecoli-contam.fasta]
  • CE35348 WBGene00000829 locus:ctb-1 status:Partially_confirmed UniProt:P24890 protein_id:CAA38156.1 Cytochrome b [c_elegans-PRJNA13758-WS250-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 370 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEALink to PubMed article]
    integral to membrane [IEALink to PubMed article]
    Biological Process: electron transport [IEALink to PubMed article]
    photosynthetic electron transport in cytochrome b6/f [IEALink to PubMed article]
    Molecular Function: oxidoreductase activity [IEALink to PubMed article]
    electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity [IEALink to PubMed article]
    iron ion binding [IEALink to PubMed article]
    electron carrier activity [IEALink to PubMed article]
    heme binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKINNSLLNF VNGMLVTLPS SKTLTLSWNF GSMLGMVLIF QILTGTFLAF YYTPDSLMAF  60
   61 STVQYIMYEV NFGWVFRIFH FNGASLFFIF LYLHIFKGLF FMSYRLKKVW MSGLTIYLLV 120
  121 MMEAFMGYVL VWAQMSFWAA VVITSLLSVI PIWGPTIVTW IWSGFGVTGA TLKFFFVLHF 180
  181 LLPWAILVIV LGHLIFLHST GSTSSLYCHG DYDKVCFSPE YLGKDAYNIV IWLLFIVLSL 240
  241 IYPFNLGDAE MFIEADPMMS PVHIVPEWYF LFAYAILRAI PNKVLGVIAL LMSIVTFYFF 300
  301 ALVNNYTSCL TKLNKFLVFM FIISSTILSW LGQCTVEDPF TILSPLFSFI YFGLAYLMLF 360
  361 IFMSSKLLFK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..370] PSI-BLAST 154.0 Mitochondrial cytochrome b subunit, C-terminal domain; Mitochondrial cytochrome b subunit, N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor
    		•  12.6027406026517 bayes_pls_golite062009
  • ubiquinol-cytochrome-c reductase activity
    		•  12.6027406026517 bayes_pls_golite062009
  • oxidoreductase activity, acting on diphenols and related substances as donors
    		•  9.20388916419937 bayes_pls_golite062009
  • hydrogen ion transmembrane transporter activity
    		•  7.91754205622571 bayes_pls_golite062009
  • oxidoreductase activity
    		•  6.47658304679899 bayes_pls_golite062009
  • electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity
    		•  6.28608054530718 bayes_pls_golite062009
  • monovalent inorganic cation transmembrane transporter activity
    		•  6.2092870783393 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  5.7873765619132 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  5.68072183887254 bayes_pls_golite062009
  • inorganic cation transmembrane transporter activity
    		•  5.3015608578326 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  5.25342386319285 bayes_pls_golite062009
  • NADH dehydrogenase activity
    		•  4.56441771839315 bayes_pls_golite062009
  • electron carrier activity
    		•  4.44921672214173 bayes_pls_golite062009
  • formate dehydrogenase activity
    		•  3.83149707063563 bayes_pls_golite062009
  • transporter activity
    		•  3.45764306673522 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  3.38637995472629 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  3.37175230596465 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH
    		•  2.22476140193744 bayes_pls_golite062009
  • catalytic activity
    		•  1.19342057724506 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors
    		•  1.03512868485178 bayes_pls_golite062009
  • binding
    		•  0.774901332897627 bayes_pls_golite062009
  • protein binding
    		•  0.404482007264961 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.158842209858127 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle