YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ctb-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.90
Transmembrane Helix	30	51	0.91
Non-Cytoplasmic	52	75	0.90
Transmembrane Helix	76	96	0.91
Cytoplasmic	97	108	0.85
Transmembrane Helix	109	132	0.86
Non-Cytoplasmic	133	138	0.74
Transmembrane Helix	139	162	0.87
Cytoplasmic	163	174	0.78
Transmembrane Helix	175	197	0.93
Non-Cytoplasmic	198	227	0.94
Transmembrane Helix	228	246	0.95
Cytoplasmic	247	258	0.82
Transmembrane Helix	259	277	0.89
Non-Cytoplasmic	278	284	0.70
Transmembrane Helix	285	306	0.90
Cytoplasmic	307	315	0.76
Transmembrane Helix	316	334	0.94
Non-Cytoplasmic	335	341	0.81
Transmembrane Helix	342	363	0.88
Cytoplasmic	364	370	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKINNSLLNF VNGMLVTLPS SKTLTLSWNF GSMLGMVLIF QILTGTFLAF YYTPDSLMAF  60
   61 STVQYIMYEV NFGWVFRIFH FNGASLFFIF LYLHIFKGLF FMSYRLKKVW MSGLTIYLLV 120
  121 MMEAFMGYVL VWAQMSFWAA VVITSLLSVI PIWGPTIVTW IWSGFGVTGA TLKFFFVLHF 180
  181 LLPWAILVIV LGHLIFLHST GSTSSLYCHG DYDKVCFSPE YLGKDAYNIV IWLLFIVLSL 240
  241 IYPFNLGDAE MFIEADPMMS PVHIVPEWYF LFAYAILRAI PNKVLGVIAL LMSIVTFYFF 300
  301 ALVNNYTSCL TKLNKFLVFM FIISSTILSW LGQCTVEDPF TILSPLFSFI YFGLAYLMLF 360
  361 IFMSSKLLFK